RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 MS4A6EQ96DS6 147 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 PHYHIPLQ96FC7 376 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 OR8D2Q9GZM6 311 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 PTGES2Q9H7Z7 377 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 PLEKHF2Q9H8W4 249 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 CXorf21Q9HAI6 301 aa3.31□□□□□ -1.88
CD44-220ENST00000525688 RPUSD1Q9UJJ7 312 aaKnown RBP3.31□□□□□ -1.88
CD44-220ENST00000525688 ZNF706Q9Y5V0 76 aaPredicted RBP3.31□□□□□ -1.88
CD44-220ENST00000525688 TLN1Q9Y490 2541 aaKnown RBP3.31□□□□□ -1.88
CD44-220ENST00000525688 CYSRT1A8MQ03 144 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 CLDN25C9JDP6 229 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 NDUFC2-KCTD14E9PQ53 114 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 J3QRK9 145 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 OVOL1O14753 267 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 GSTZ1O43708 216 aaPredicted RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 CD5LO43866 347 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 TNFSF13O75888 250 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 WISP3O95389 354 aaPredicted RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 NRASP01111 189 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 ADRA2AP08913 450 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 SMIM17P0DL12 118 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 BCL2P10415 239 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 DIO3P55073 304 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 RPS11P62280 158 aaKnown RBP eCLIP3.3□□□□□ -1.88
CD44-220ENST00000525688 RPS25P62851 125 aaKnown RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 KRTAP27-1Q3LI81 207 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 GLYATL3Q5SZD4 288 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 C9orf129Q5T035 196 aaKnown RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 MRPL2Q5T653 305 aaKnown RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 RASL11AQ6T310 242 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 LINC01551Q86U37 167 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 MARCH3Q86UD3 253 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 LRP11Q86VZ4 500 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 ZNF555Q8NEP9 628 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 OR2M3Q8NG83 312 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 OR1J4Q8NGS1 313 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 ZNF721Q8TF20 911 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 RTN4IP1Q8WWV3 396 aaPredicted RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 GNPNAT1Q96EK6 184 aaPredicted RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 ERMAPQ96PL5 475 aaPredicted RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 OR2A5Q96R48 311 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 TIMM17AQ99595 171 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 CCL13Q99616 98 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 HSD17B10Q99714 261 aaKnown RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 FAM60AQ9NP50 221 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 MRPL16Q9NX20 251 aaKnown RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 TVP23BQ9NYZ1 205 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 ZNF230Q9UIE0 474 aaPredicted RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 AMMECR1Q9Y4X0 333 aaPredicted RBP3.3□□□□□ -1.88
CD44-220ENST00000525688 COL12A1Q99715 3063 aa3.3□□□□□ -1.88
CD44-220ENST00000525688 SEC16AO15027 2179 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 MAST4O15021 2626 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 FLNBO75369 2602 aaKnown RBP3.29□□□□□ -1.88
CD44-220ENST00000525688 IGHV3-74A0A0B4J1X5 117 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 TRAV5A0A0B4J249 113 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 TRDV1A0A1B0GX56 115 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 ZFP92A6NM28 416 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 B4DEV8 164 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 H7BYZ3 331 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 CORTO00230 105 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 LST1O00453 97 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 OR7C2O60412 319 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 OPN1SWP03999 348 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 HLA-DPB1P04440 258 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 AZU1P20160 251 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 GABARAPL2P60520 117 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 PPP3R1P63098 170 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 EBLN2Q6P2I7 272 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 C1orf174Q8IYL3 243 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 CEND1Q8N111 149 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 SLC22A24Q8N4F4 322 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 C14orf178Q8N769 122 aaPredicted RBP3.29□□□□□ -1.88
CD44-220ENST00000525688 C7orf33Q8WU49 177 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 ABHD14BQ96IU4 210 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 CARD19Q96LW7 228 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 NRIP2Q9BQI9 281 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 RTL8AQ9BWD3 113 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 ZNF471Q9BX82 626 aaPredicted RBP3.29□□□□□ -1.88
CD44-220ENST00000525688 LHX9Q9NQ69 397 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 MCTS1Q9ULC4 181 aaKnown RBP3.29□□□□□ -1.88
CD44-220ENST00000525688 TNFSF18Q9UNG2 199 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 SPENQ96T58 3664 aaKnown RBP3.29□□□□□ -1.88
CD44-220ENST00000525688 SNRNP200O75643 2136 aaKnown RBP3.29□□□□□ -1.88
CD44-220ENST00000525688 SPTBP11277 2137 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 SPTA1P02549 2419 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 TENM4Q6N022 2769 aa3.29□□□□□ -1.88
CD44-220ENST00000525688 GCN1Q92616 2671 aaKnown RBP3.28□□□□□ -1.88
CD44-220ENST00000525688 HELZ2Q9BYK8 2649 aaKnown RBP3.28□□□□□ -1.88
CD44-220ENST00000525688 ZNF462Q96JM2 2506 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 TMEM72A0PK05 275 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 A8MUN3 132 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 GABARAPO95166 117 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 OPRM1P35372 400 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 OPRK1P41145 380 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 PKIAP61925 76 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 SLC38A11Q08AI6 406 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 PSG7Q13046 419 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 DEFB110Q30KQ9 67 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 Q5XG85 94 aa3.28□□□□□ -1.88
CD44-220ENST00000525688 CEMP1Q6PRD7 247 aaPredicted RBP3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms