RNA–Protein interactions for RNA: ENST00000513148.1

HMGCL-209, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 2

Gene HMGCL, Length 2,011 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-209ENST00000513148 ZNF329Q86UD4 541 aa12.96□□□□□ -0.33
HMGCL-209ENST00000513148 FAM103A1Q9BTL3 118 aaKnown RBP12.96□□□□□ -0.33
HMGCL-209ENST00000513148 YPEL3P61236 119 aaPredicted RBP12.96□□□□□ -0.34
HMGCL-209ENST00000513148 ZNF726P1Q15940 193 aa12.96□□□□□ -0.34
HMGCL-209ENST00000513148 CXorf66Q5JRM2 361 aaPredicted RBP12.96□□□□□ -0.34
HMGCL-209ENST00000513148 TMEM144Q7Z5S9 345 aa12.96□□□□□ -0.34
HMGCL-209ENST00000513148 OR4B1Q8NGF8 309 aa12.96□□□□□ -0.34
HMGCL-209ENST00000513148 WNT10AQ9GZT5 417 aa12.96□□□□□ -0.34
HMGCL-209ENST00000513148 TIMM9Q9Y5J7 89 aa12.96□□□□□ -0.34
HMGCL-209ENST00000513148 CNIH1O95406 144 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 TOMM40O96008 361 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 TEX45Q8NA69 505 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 MANBALQ9NQG1 85 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 SLC45A2Q9UMX9 530 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 KRASP01116 189 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 SERPINE2P07093 398 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 G6PCP35575 357 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 PSMB3P49720 205 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 RPS20P60866 119 aaKnown RBP12.95□□□□□ -0.34
HMGCL-209ENST00000513148 TNXAQ16473 311 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 ECSCRQ19T08 205 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 OR4A47Q6IF82 309 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 SPATA3Q8NHX4 192 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 VAMP8Q9BV40 100 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 ZNF747Q9BV97 191 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 ZNF430Q9H8G1 570 aaPredicted RBP12.95□□□□□ -0.34
HMGCL-209ENST00000513148 TRAPPC1Q9Y5R8 145 aa12.95□□□□□ -0.34
HMGCL-209ENST00000513148 TRAV9-1A0A075B6T8 112 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 PSMB11A5LHX3 300 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 H0Y980 276 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 PPBPP02775 128 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 ERVK-16P61578 105 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 FXYD3Q14802 87 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 PRSS8Q16651 343 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 MRGPRG-AS1Q2M3A8 158 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 SLC25A24Q6NUK1 477 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 LCN15Q6UWW0 184 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 ZNF562Q6V9R5 426 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 TMEM217Q8N7C4 229 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 TCTEX1D1Q8N7M0 179 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 OR5AU1Q8NGC0 362 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 VSTM2AQ8TAG5 236 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 CMTM2Q8TAZ6 248 aa12.94□□□□□ -0.34
HMGCL-209ENST00000513148 G3V318 75 aa12.93□□□□□ -0.34
HMGCL-209ENST00000513148 SSBP2P81877 361 aaPredicted RBP12.93□□□□□ -0.34
HMGCL-209ENST00000513148 ARPC1AQ92747 370 aa12.93□□□□□ -0.34
HMGCL-209ENST00000513148 TMEM140Q9NV12 185 aa12.93□□□□□ -0.34
HMGCL-209ENST00000513148 ACTL6BO94805 426 aa12.93□□□□□ -0.34
HMGCL-209ENST00000513148 APELAP0DMC3 54 aa12.93□□□□□ -0.34
HMGCL-209ENST00000513148 CD28P10747 220 aa12.93□□□□□ -0.34
HMGCL-209ENST00000513148 UBE2V1Q13404 147 aa12.93□□□□□ -0.34
HMGCL-209ENST00000513148 TOMM20LQ6UXN7 152 aa12.93□□□□□ -0.34
HMGCL-209ENST00000513148 SLC24A4Q8NFF2 622 aa12.93□□□□□ -0.34
HMGCL-209ENST00000513148 RNASE8Q8TDE3 154 aaKnown RBP12.93□□□□□ -0.34
HMGCL-209ENST00000513148 IGKV1-39P01597 117 aa12.92□□□□□ -0.34
HMGCL-209ENST00000513148 IGKV1D-39P04432 117 aa12.92□□□□□ -0.34
HMGCL-209ENST00000513148 IGF1P05019 195 aa12.92□□□□□ -0.34
HMGCL-209ENST00000513148 C10orf55Q5SWW7 151 aa12.92□□□□□ -0.34
HMGCL-209ENST00000513148 NECAP1Q8NC96 275 aa12.92□□□□□ -0.34
HMGCL-209ENST00000513148 CITED1Q99966 193 aa12.92□□□□□ -0.34
HMGCL-209ENST00000513148 PARLQ9H300 379 aa12.92□□□□□ -0.34
HMGCL-209ENST00000513148 TRAV3A0A0B4J244 114 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 TRAV41A0A0B4J266 112 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 EGR2P11161 476 aaPredicted RBP12.91□□□□□ -0.34
HMGCL-209ENST00000513148 PTTG1IPP53801 180 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 HBG1P69891 147 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 HBG2P69892 147 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 SLC35B1P78383 322 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 ATP6V1FQ16864 119 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 SHISA2Q6UWI4 295 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 MMD2Q8IY49 270 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 TMEM167AQ8TBQ9 72 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 WIPF2Q8TF74 440 aaPredicted RBP12.91□□□□□ -0.34
HMGCL-209ENST00000513148 SLC39A9Q9NUM3 307 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 BET1LQ9NYM9 111 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 TNCP24821 2201 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 F6UZH7 168 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 MYOD1P15172 320 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 POU2AF1Q16633 256 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 KHDC1LQ5JSQ8 128 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 Q6ZWC4 215 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 LINC01551Q86U37 167 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 TMEM256Q8N2U0 113 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 OR4X2Q8NGF9 303 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 CIB3Q96Q77 187 aaPredicted RBP12.91□□□□□ -0.34
HMGCL-209ENST00000513148 RNF2Q99496 336 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 ELOVL1Q9BW60 279 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 UQCR10Q9UDW1 63 aa12.91□□□□□ -0.34
HMGCL-209ENST00000513148 RPL8P62917 257 aaKnown RBP12.9□□□□□ -0.34
HMGCL-209ENST00000513148 UNQ5815/PRO19632Q6UWF5 114 aa12.9□□□□□ -0.34
HMGCL-209ENST00000513148 LCNL1Q6ZST4 164 aa12.9□□□□□ -0.34
HMGCL-209ENST00000513148 SGMS2Q8NHU3 365 aa12.9□□□□□ -0.34
HMGCL-209ENST00000513148 SRSF12Q8WXF0 261 aaKnown RBP12.9□□□□□ -0.34
HMGCL-209ENST00000513148 DNHD1Q96M86 4753 aa12.9□□□□□ -0.34
HMGCL-209ENST00000513148 ANK2Q01484 3957 aa12.9□□□□□ -0.34
HMGCL-209ENST00000513148 CCL25O15444 150 aa12.89□□□□□ -0.35
HMGCL-209ENST00000513148 CTRLP40313 264 aa12.89□□□□□ -0.35
HMGCL-209ENST00000513148 Q0VG73 95 aa12.89□□□□□ -0.35
HMGCL-209ENST00000513148 TCTEX1D4Q5JR98 221 aa12.89□□□□□ -0.35
HMGCL-209ENST00000513148 SMIM15Q7Z3B0 74 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms