RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 MMP23AO75900 390 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 TOMM40O96008 361 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 IGLV1-44P01699 117 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 SMIM13P0DJ93 91 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 HERVK_113P61574 105 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 ABHD17AQ96GS6 310 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 MS4A6AQ9H2W1 248 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 NCOR1P1Q9H4R4 102 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 UBTD1Q9HAC8 227 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 TMEM160Q9NX00 188 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 FREM1Q5H8C1 2179 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 A0A1W2PPI3 338 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 C10orf142B7Z368 130 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 H3BUT2 72 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 CFHR2P36980 270 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 UBE2V1Q13404 147 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 LDLRAD2Q5SZI1 272 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 ARPC1AQ92747 370 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 HIST1H4GQ99525 98 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 MCRIP2Q9BUT9 160 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 DCAF16Q9NXF7 216 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 IGHV2-26A0A0B4J1V2 119 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 SRRM4A7MD48 611 aaKnown RBP6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 RAB9AP51151 201 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 CACNG7P62955 275 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 LYRM7Q5U5X0 104 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 AMMECR1LQ6DCA0 310 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 TNFRSF14Q92956 283 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 KLK15Q9H2R5 256 aa6.82□□□□□ -1.32
LIMCH1-216ENST00000512820 IGHV3-66A0A0C4DH42 116 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 SH2D7A6NKC9 451 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 TIMM23O14925 209 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 HBDP02042 147 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 GATA4P43694 442 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 LYPD2Q6UXB3 125 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 ZNF502Q8TBZ5 544 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 FNDC4Q9H6D8 234 aaPredicted RBP6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 IGHV3-49A0A0A0MS15 119 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 TRAV8-6A0A0B4J262 113 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 DLX6P56179 175 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 TDRG1Q3Y452 100 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 FAM231DQ6ZW35 169 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 SPACA3Q8IXA5 215 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 RIF1Q5UIP0 2472 aaKnown RBP6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 IGHV1-3A0A0C4DH29 117 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 NUP37Q8NFH4 326 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 OR10J6PQ8NGY7 276 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 FOXC2Q99958 501 aa6.81□□□□□ -1.32
LIMCH1-216ENST00000512820 A0A087X0K7 114 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 A0A1B0GWJ7 208 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 POU2AF1Q16633 256 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 SIGLEC9Q9Y336 463 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 SPCS1Q9Y6A9 102 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 COX11Q9Y6N1 276 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 APC2O95996 2303 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 USF3Q68DE3 2245 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 WT1-ASQ06250 92 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 ZNF833PQ6ZTB9 187 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 RPRMLQ8N4K4 120 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 ABCA1O95477 2261 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 LEPP41159 167 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 ADIPOQQ15848 244 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 SMIM12Q96EX1 92 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 FABP5P3A8MUU1 101 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 D6R8Y8 96 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 Q86TA4 180 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 FAM168AQ92567 244 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 ASCL2Q99929 193 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 PHLDA3Q9Y5J5 127 aa6.8□□□□□ -1.32
LIMCH1-216ENST00000512820 FAM71F2Q6NXP2 309 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 IFI27L1Q96BM0 104 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 NPIPB5A8MRT5 1133 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 CIDEAO60543 219 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 IGLL1P15814 213 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 SEC11AP67812 179 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 GAGE1Q13065 139 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 KHDC1LQ5JSQ8 128 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 LYZL1Q6UWQ5 148 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 STPG4Q8N801 248 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 GFRA4Q9GZZ7 299 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 ATP5LO75964 103 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 P0C879 139 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 TDGF1P13385 188 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 KLF17Q5JT82 389 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 IGKV2-40A0A087WW87 121 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 C19orf67A6NJJ6 358 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 IGKV2D-40P01614 121 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 PPIFP30405 207 aaKnown RBP6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 PSMB2P49721 201 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 OR4X2Q8NGF9 303 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 Q8TCH9 128 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 EEF1AKMT3Q96AZ1 226 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 ZNF492Q9P255 531 aa6.79□□□□□ -1.32
LIMCH1-216ENST00000512820 FXYD7P58549 80 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 ATP5G2Q06055 141 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 WNK2Q9Y3S1 2297 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 ADAMTS9Q9P2N4 1935 aa6.78□□□□□ -1.32
LIMCH1-216ENST00000512820 LOC107984156A0A0G2JMH3 177 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms