RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 IFI30P13284 250 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 SPI1P17947 270 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 CASP1P29466 404 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 RNASE4P34096 147 aaKnown RBP1.58□□□□□ -2.16
USP53-204ENST00000507906 KHDC3LQ587J8 217 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 OR8B3Q8NGG8 313 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 NEK7Q8TDX7 302 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 C2orf50Q96LR7 162 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 GINS4Q9BRT9 223 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 BATF3Q9NR55 127 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 OSTCQ9NRP0 149 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 CKLFQ9UBR5 152 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 MED1Q15648 1581 aaPredicted RBP1.58□□□□□ -2.16
USP53-204ENST00000507906 ZCCHC11Q5TAX3 1644 aaKnown RBP1.58□□□□□ -2.16
USP53-204ENST00000507906 MAP3K4Q9Y6R4 1608 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 PTPRFP10586 1907 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 AKAP11Q9UKA4 1901 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 MROH2AA6NES4 1674 aa1.58□□□□□ -2.16
USP53-204ENST00000507906 COL5A3P25940 1745 aaPredicted RBP1.57□□□□□ -2.16
USP53-204ENST00000507906 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.57□□□□□ -2.16
USP53-204ENST00000507906 DOCK2Q92608 1830 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 AGLP35573 1532 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 ATP7AQ04656 1500 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 ZNF106Q9H2Y7 1883 aaKnown RBP1.57□□□□□ -2.16
USP53-204ENST00000507906 FRMPD1Q5SYB0 1578 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 TRBV19A0A075B6N1 114 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 ATG12O94817 140 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 PMP2P02689 132 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 S100A4P26447 101 aaKnown RBP1.57□□□□□ -2.16
USP53-204ENST00000507906 TAS2R41P59536 307 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 GNG3P63215 75 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 GNG5P63218 68 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 Q1T7F1 81 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 KRTAP5-7Q6L8G8 165 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 COA5Q86WW8 74 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 GINS3Q9BRX5 216 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 RNF122Q9H9V4 155 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 PRNDQ9UKY0 176 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 TMEM131LA2VDJ0 1609 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 FMN2Q9NZ56 1722 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 LAMB4A4D0S4 1761 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 OVOS2A0A0G2JMS6 1433 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 OVOS2A0A0J9YW53 1432 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 KDM6AO15550 1401 aaPredicted RBP1.57□□□□□ -2.16
USP53-204ENST00000507906 OVOS2Q6IE36 1432 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 TRAPPC8Q9Y2L5 1435 aa1.57□□□□□ -2.16
USP53-204ENST00000507906 ATP7BP35670 1465 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 ZNF518AQ6AHZ1 1483 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP1.56□□□□□ -2.16
USP53-204ENST00000507906 LRRC7Q96NW7 1537 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 CEP170BQ9Y4F5 1589 aaPredicted RBP1.56□□□□□ -2.16
USP53-204ENST00000507906 SCN10AQ9Y5Y9 1956 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 KIAA0556O60303 1618 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 RAPGEF6Q8TEU7 1601 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 MPDZO75970 2070 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 J3QRK9 145 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 MFSD11O43934 449 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 RPSAP08865 295 aaKnown RBP1.56□□□□□ -2.16
USP53-204ENST00000507906 HTR1AP08908 422 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 CRYBA4P53673 196 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 KRTAP12-4P60329 112 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 NCALDP61601 193 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 ZNF846Q147U1 533 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 RHEBQ15382 184 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 SNCBQ16143 134 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 WFDC11Q8NEX6 87 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 OR8D4Q8NGM9 314 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 AQP3Q92482 292 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 Q96M85 177 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 YIPF3Q9GZM5 350 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 NWD2Q9ULI1 1742 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 LAMB2P55268 1798 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 ARFGEF2Q9Y6D5 1785 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 FER1L6Q2WGJ9 1857 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 GBF1Q92538 1859 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 CD109Q6YHK3 1445 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 ERVK-7P63135 1459 aa1.56□□□□□ -2.16
USP53-204ENST00000507906 RIMBP3CA6NJZ7 1639 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 RIMBP3BA6NNM3 1639 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 LRRC37A3O60309 1634 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 DEPDC5O75140 1603 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 KIF1AQ12756 1690 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 MARF1Q9Y4F3 1742 aaKnown RBP1.55□□□□□ -2.16
USP53-204ENST00000507906 RGPD8O14715 1765 aaPredicted RBP1.55□□□□□ -2.16
USP53-204ENST00000507906 RGPD5Q99666 1765 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 TAF1LQ8IZX4 1826 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 TRAV1-1A0A0B4J248 108 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 TMEM212A6NML5 194 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 E5RI56 91 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 CYB5BO43169 146 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 IFNA1P01562 189 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 OR4E1P0C645 316 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 UBBP0CG47 229 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 IDO1P14902 403 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 VBP1P61758 197 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 GNGT1P63211 74 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 NDUFA5Q16718 116 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 WHAMMP3Q1A5X7 153 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 ZNF826PQ6ZT77 177 aa1.55□□□□□ -2.16
USP53-204ENST00000507906 TMED4Q7Z7H5 227 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms