RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 DNASE2O00115 360 aaPredicted RBP11.04□□□□□ -0.64
CUX1-209ENST00000487284 TCF21O43680 179 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 BRI3O95415 125 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 LYZP61626 148 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 C15orf32Q32M92 178 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 TMEM95Q3KNT9 176 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 Q56UQ5 140 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 AWAT1Q58HT5 328 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 CST9LP1Q5W188 147 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 ZNF502Q8TBZ5 544 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 NIPSNAP3BQ9BS92 247 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 ZNF702PQ9H963 129 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 LINC00527Q9UJ94 153 aa11.04□□□□□ -0.64
CUX1-209ENST00000487284 PUS1Q9Y606 427 aaKnown RBP eCLIP11.04□□□□□ -0.64
CUX1-209ENST00000487284 WI2-2373I1.2A0A1W2PRP0 233 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 SCGB2A1O75556 95 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 SRSF2Q01130 221 aaKnown RBP11.03□□□□□ -0.64
CUX1-209ENST00000487284 RHEBQ15382 184 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 FAM74A3Q4VXF1 159 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 ZNF491Q8N8L2 437 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 TVP23CQ96ET8 276 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 PRSS22Q9GZN4 317 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 MRPL27Q9P0M9 148 aaKnown RBP11.03□□□□□ -0.64
CUX1-209ENST00000487284 HIGD1AQ9Y241 93 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 C7orf77A4D0Y5 90 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 ZNF727A8MUV8 499 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 M0R036 132 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 AP4M1O00189 453 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 OR2C1O95371 312 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 CTSGP08311 255 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 OR10J4P0C629 311 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 NPPCP23582 126 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 PPIFP30405 207 aaKnown RBP11.03□□□□□ -0.64
CUX1-209ENST00000487284 UBE2L3P68036 154 aaKnown RBP11.03□□□□□ -0.64
CUX1-209ENST00000487284 LURAP1LQ8IV03 231 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 STXBP6Q8NFX7 210 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 RNF125Q96EQ8 232 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 SMIM7Q9BQ49 75 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 PAXXQ9BUH6 204 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 PARLQ9H300 379 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 OR51M1Q9H341 326 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 C2CD3Q4AC94 2353 aa11.03□□□□□ -0.64
CUX1-209ENST00000487284 FAM223BA6NKX1 122 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 H3BUA1 57 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 IGHV3-23P01764 117 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 ADMP35318 185 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 PNRC1Q12796 327 aaPredicted RBP11.02□□□□□ -0.65
CUX1-209ENST00000487284 KIAA0141Q14154 515 aaPredicted RBP11.02□□□□□ -0.65
CUX1-209ENST00000487284 Q6ZSV7 163 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 FAM223AQ8IWN6 122 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 Q8WTZ3 238 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 C11orf52Q96A22 123 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 RPUSD4Q96CM3 377 aaKnown RBP11.02□□□□□ -0.65
CUX1-209ENST00000487284 FXYD5Q96DB9 178 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 NOL4LQ96MY1 436 aaPredicted RBP11.02□□□□□ -0.65
CUX1-209ENST00000487284 ATP6V0BQ99437 205 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 C20orf24Q9BUV8 137 aa11.02□□□□□ -0.65
CUX1-209ENST00000487284 GAR1Q9NY12 217 aaKnown RBP11.02□□□□□ -0.65
CUX1-209ENST00000487284 A0A1W2PRE2 83 aa11.01□□□□□ -0.65
CUX1-209ENST00000487284 OR2T8A6NH00 312 aa11.01□□□□□ -0.65
CUX1-209ENST00000487284 PYYP10082 97 aa11.01□□□□□ -0.65
CUX1-209ENST00000487284 EEF1AKMT3Q96AZ1 226 aa11.01□□□□□ -0.65
CUX1-209ENST00000487284 CCDC140Q96MF4 163 aa11.01□□□□□ -0.65
CUX1-209ENST00000487284 SLC25A39Q9BZJ4 359 aaPredicted RBP11.01□□□□□ -0.65
CUX1-209ENST00000487284 SDF2L1Q9HCN8 221 aa11.01□□□□□ -0.65
CUX1-209ENST00000487284 TRBV7-1A0A0A6YYK4 115 aa11□□□□□ -0.65
CUX1-209ENST00000487284 H3BRN7 92 aa11□□□□□ -0.65
CUX1-209ENST00000487284 IL4P05112 153 aa11□□□□□ -0.65
CUX1-209ENST00000487284 GP9P14770 177 aa11□□□□□ -0.65
CUX1-209ENST00000487284 RPL15P61313 204 aaKnown RBP11□□□□□ -0.65
CUX1-209ENST00000487284 CFHR3Q02985 330 aa11□□□□□ -0.65
CUX1-209ENST00000487284 Q8N2B8 174 aa11□□□□□ -0.65
CUX1-209ENST00000487284 ZNF414Q96IQ9 312 aa11□□□□□ -0.65
CUX1-209ENST00000487284 MS4A10Q96PG2 267 aa11□□□□□ -0.65
CUX1-209ENST00000487284 SHANK2-AS3Q9BTD1 123 aa11□□□□□ -0.65
CUX1-209ENST00000487284 CHRDL1Q9BU40 450 aa11□□□□□ -0.65
CUX1-209ENST00000487284 RPS10P5Q9NQ39 176 aa11□□□□□ -0.65
CUX1-209ENST00000487284 TMEM14CQ9P0S9 112 aa11□□□□□ -0.65
CUX1-209ENST00000487284 NAT8Q9UHE5 227 aa11□□□□□ -0.65
CUX1-209ENST00000487284 GGTLC3B5MD39 225 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 NUPL2O15504 423 aaKnown RBP10.99□□□□□ -0.65
CUX1-209ENST00000487284 CRYBA1P05813 215 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 GPR183P32249 361 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 ATP5G2Q06055 141 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 USF2Q15853 346 aaPredicted RBP10.99□□□□□ -0.65
CUX1-209ENST00000487284 ZNF674Q2M3X9 581 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 ZNF343Q6P1L6 599 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 TMEM88Q6PEY1 159 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 CBLN2Q8IUK8 224 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 SCO2A0A1W2PP80 73 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 B4DEV8 164 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 NDUFB4O95168 129 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 IGLV1-40P01703 118 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 TRGV3P03979 118 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 TMEM241Q24JQ0 296 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 ZNF600Q6ZNG1 722 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 S100A7AQ86SG5 101 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 SERTAD4Q9NUC0 356 aa10.99□□□□□ -0.65
CUX1-209ENST00000487284 A0A087WWC5 75 aa10.98□□□□□ -0.65
CUX1-209ENST00000487284 AKR1C3P42330 323 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms