RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 C17orf98A8MV24 154 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 DEFB108AA8MXU0 73 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 H3BQ15 152 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 K7EMT4 169 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 S1PR2O95136 353 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 KRASP01116 189 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 OXTP01178 125 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 MT-ND4LP03901 98 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 FBP1P09467 338 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 RAB5AP20339 215 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 USF1P22415 310 aaPredicted RBP2.88□□□□□ -1.95
VPS29-202ENST00000447578 PAX6P26367 422 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 SSTR5P35346 364 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 ATP5J2P56134 94 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 UBE2KP61086 200 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 LYZP61626 148 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 HBG1P69891 147 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 HBG2P69892 147 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 SLC38A11Q08AI6 406 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 EIF4EBP1Q13541 118 aaPredicted RBP2.88□□□□□ -1.95
VPS29-202ENST00000447578 LRRC75BQ2VPJ9 315 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 SMIM21Q3B7S5 101 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 RNF212Q495C1 297 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 SPINK9Q5DT21 86 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 LCN15Q6UWW0 184 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 Q6ZR54 194 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 LRP11Q86VZ4 500 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 FAM24BQ8N5W8 94 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 CYB561D1Q8N8Q1 229 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 CLDND2Q8NHS1 167 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 STARD4Q96DR4 205 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 OR4C12Q96R67 309 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 PSMG3Q9BT73 122 aaPredicted RBP2.88□□□□□ -1.95
VPS29-202ENST00000447578 TMEM147Q9BVK8 224 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 WDR61Q9GZS3 305 aaKnown RBP2.88□□□□□ -1.95
VPS29-202ENST00000447578 RAB1BQ9H0U4 201 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 SMDT1Q9H4I9 107 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 VSIRQ9H7M9 311 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 TUBA4BQ9H853 241 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 RPRMQ9NS64 109 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.88□□□□□ -1.95
VPS29-202ENST00000447578 PSG11Q9UQ72 335 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 BRWD1Q9NSI6 2320 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 ALPK2Q86TB3 2170 aa2.88□□□□□ -1.95
VPS29-202ENST00000447578 SDK2Q58EX2 2172 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 C5orf42Q9H799 3197 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 CDH23Q9H251 3354 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 TRAV1-1A0A0B4J248 108 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 MAP1LC3B2A6NCE7 125 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 A6NDN8 102 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 CEBPZOSA8MTT3 80 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 C15orf65H3BRN8 121 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 M0R1X1 148 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 HMGB3O15347 200 aaKnown RBP2.87□□□□□ -1.95
VPS29-202ENST00000447578 ZNF737O75373 536 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 IFNA1P01562 189 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 IFNA17P01571 189 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 IGHV3-7P01780 117 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 IFNA4P05014 189 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 S100A6P06703 90 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 CRISP2P16562 243 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 FGF7P21781 194 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 EDDM3BP56851 147 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 OR2B8PP59922 312 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 RPS23P62266 143 aaKnown RBP2.87□□□□□ -1.95
VPS29-202ENST00000447578 SERF2P84101 59 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 TNFRSF9Q07011 255 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 ATP6V1FQ16864 119 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 KHDC3LQ587J8 217 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 SPRNQ5BIV9 151 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 GCSAMLQ5JQS6 135 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 TIMM23BQ5SRD1 257 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 TMEM14EPQ6UXP3 125 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 SSX7Q7RTT5 188 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 ZNF429Q86V71 674 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 C1orf174Q8IYL3 243 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 RPRMLQ8N4K4 120 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 ZNF561Q8N587 486 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 NPBQ8NG41 125 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 OR10P1Q8NGE3 313 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 OR4S2Q8NH73 311 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 DTD1Q8TEA8 209 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 MBD3L1Q8WWY6 194 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 CACNG8Q8WXS5 425 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 S100PBPQ96BU1 408 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 MUCL1Q96DR8 90 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 TVP23CQ96ET8 276 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 OR2V2Q96R30 315 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 HSD17B10Q99714 261 aaKnown RBP2.87□□□□□ -1.95
VPS29-202ENST00000447578 AGMATQ9BSE5 352 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 MAP1LC3CQ9BXW4 147 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 PARD6GQ9BYG4 376 aaPredicted RBP2.87□□□□□ -1.95
VPS29-202ENST00000447578 MAP1LC3BQ9GZQ8 125 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 TOLLIPQ9H0E2 274 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 COA4Q9NYJ1 87 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 TIMM9Q9Y5J7 89 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 V9GYY9 64 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 KIAA1549Q9HCM3 1950 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 CACNA1CQ13936 2221 aa2.87□□□□□ -1.95
VPS29-202ENST00000447578 KNL1Q8NG31 2342 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms