RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 TRAV21A0A0B4J279 112 aa9.39□□□□□ -0.91
PTCH1-208ENST00000430669 IGKV1-16P04430 117 aa9.39□□□□□ -0.91
PTCH1-208ENST00000430669 COL8A2P25067 703 aa9.39□□□□□ -0.91
PTCH1-208ENST00000430669 DSCAML1Q8TD84 2053 aa9.39□□□□□ -0.91
PTCH1-208ENST00000430669 RNF166Q96A37 237 aaPredicted RBP9.39□□□□□ -0.91
PTCH1-208ENST00000430669 J3QLI3 93 aa9.39□□□□□ -0.91
PTCH1-208ENST00000430669 GATA2P23769 480 aaPredicted RBP9.39□□□□□ -0.91
PTCH1-208ENST00000430669 A1L4Q6 167 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 TRBV20OR9-2A0A075B6H5 130 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 RNASE7Q9H1E1 156 aaKnown RBP9.38□□□□□ -0.91
PTCH1-208ENST00000430669 TRAV3A0A0B4J244 114 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 IGHV2-70DA0A0C4DH43 119 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 SLC17A3O00476 420 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 HOXA5P20719 270 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 ZNF562Q6V9R5 426 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 DPH3P1Q9H4G8 78 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 JOSD1Q15040 202 aaPredicted RBP9.38□□□□□ -0.91
PTCH1-208ENST00000430669 C2orf88Q9BSF0 95 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 ZNF56Q15929 161 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 PRELID3AQ96N28 172 aa9.38□□□□□ -0.91
PTCH1-208ENST00000430669 SRSF9Q13242 221 aaKnown RBP eCLIP9.37□□□□□ -0.91
PTCH1-208ENST00000430669 SAA4P35542 130 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 ATRAIDQ6UW56 229 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 PSMB11A5LHX3 300 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 PRR30Q53SZ7 412 aaPredicted RBP9.37□□□□□ -0.91
PTCH1-208ENST00000430669 LDLRAD2Q5SZI1 272 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 TMEM136Q6ZRR5 245 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 OCC1Q8TAD7 63 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 NEUROG1Q92886 237 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 DDTP30046 118 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 POU2AF1Q16633 256 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 GFRA4Q9GZZ7 299 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 PSG8Q9UQ74 426 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 H3BTX0 84 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 MDKP21741 143 aaPredicted RBP9.37□□□□□ -0.91
PTCH1-208ENST00000430669 Q6ZRM9 215 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 SEPSECSQ9HD40 501 aaKnown RBP9.37□□□□□ -0.91
PTCH1-208ENST00000430669 DCAF16Q9NXF7 216 aa9.37□□□□□ -0.91
PTCH1-208ENST00000430669 ZNF414Q96IQ9 312 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 DMRTA2Q96SC8 542 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 LINC01551Q86U37 167 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 TMEM75Q8N9X5 138 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 VSIRQ9H7M9 311 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 A0A0G2JRQ6 117 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 GRIFINA4D1Z8 144 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 PYYP10082 97 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 NMUP48645 174 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 ZNF841Q6ZN19 808 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 HS3ST6Q96QI5 342 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 TET2Q6N021 2002 aaPredicted RBP9.36□□□□□ -0.91
PTCH1-208ENST00000430669 NPIPB5A8MRT5 1133 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 RNF151Q2KHN1 245 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 OR1N2Q8NGR9 330 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 NXT2Q9NPJ8 142 aaKnown RBP9.36□□□□□ -0.91
PTCH1-208ENST00000430669 RNASE4P34096 147 aaKnown RBP9.36□□□□□ -0.91
PTCH1-208ENST00000430669 A0A1W2PPI3 338 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 SMAD7O15105 426 aaKnown RBP9.36□□□□□ -0.91
PTCH1-208ENST00000430669 BPESC1Q9GZL8 116 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 LOC105371267A0A1B0GV96 52 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 SLC25A34Q6PIV7 304 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 CBY1Q9Y3M2 126 aa9.36□□□□□ -0.91
PTCH1-208ENST00000430669 OR4C46A6NHA9 309 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 SHISA9B4DS77 424 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 M0R3E3 92 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 LINC00477Q96M19 166 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 WNK1Q9H4A3 2382 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 CIRBPQ14011 172 aaKnown RBP9.35□□□□□ -0.91
PTCH1-208ENST00000430669 C10orf91Q5T1B1 145 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 KLRD1Q13241 179 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 MSMBP08118 114 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 LYPD6Q86Y78 171 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST1H2BKO60814 126 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST1H2BJP06899 126 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST1H2BOP23527 126 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST1H2BBP33778 126 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST1H2BDP58876 126 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST1H2BCP62807 126 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 PSG3Q16557 428 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST2H2BEQ16778 126 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 ACTL10Q5JWF8 245 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.35□□□□□ -0.91
PTCH1-208ENST00000430669 REC114Q7Z4M0 266 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST1H2BHQ93079 126 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST1H2BNQ99877 126 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 HIST1H2BMQ99879 126 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 GCSAMLQ5JQS6 135 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 RPRMLQ8N4K4 120 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 S4R3C0 116 aa9.35□□□□□ -0.91
PTCH1-208ENST00000430669 GNG5P63218 68 aa9.34□□□□□ -0.91
PTCH1-208ENST00000430669 C9orf139Q6ZV77 190 aa9.34□□□□□ -0.91
PTCH1-208ENST00000430669 YPEL3P61236 119 aaPredicted RBP9.34□□□□□ -0.91
PTCH1-208ENST00000430669 IGHV3-66A0A0C4DH42 116 aa9.34□□□□□ -0.91
PTCH1-208ENST00000430669 PMS2P5A8MQ11 134 aa9.34□□□□□ -0.91
PTCH1-208ENST00000430669 CD24P25063 80 aa9.34□□□□□ -0.91
PTCH1-208ENST00000430669 TMEM249Q2WGJ8 235 aa9.34□□□□□ -0.91
PTCH1-208ENST00000430669 AMMECR1LQ6DCA0 310 aa9.34□□□□□ -0.91
PTCH1-208ENST00000430669 BDP1A6H8Y1 2624 aa9.34□□□□□ -0.91
PTCH1-208ENST00000430669 TRGV11A0A075B6L2 103 aa9.34□□□□□ -0.91
PTCH1-208ENST00000430669 CBY3A6NI87 242 aa9.34□□□□□ -0.91
PTCH1-208ENST00000430669 ADMP35318 185 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms