RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 RNF11Q9Y3C5 154 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 OVOS2A0A0J9YW53 1432 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 RIC1Q4ADV7 1423 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 OVOS2Q6IE36 1432 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 YEATS2Q9ULM3 1422 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 BICRAQ9NZM4 1560 aa2.9□□□□□ -1.95
CCDC88A-206ENST00000430086 TAF1LQ8IZX4 1826 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 TRBV10-2A0A0K0K1G8 114 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 A0A1B0GW64 132 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 H3BMG7 143 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 K7EM74 188 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 K7ERU9 68 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 SDCBPO00560 298 aaPredicted RBP2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 DLEU1O43261 78 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 HTR1AP08908 422 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 KRTAP25-1Q3LHN0 102 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 ARL11Q969Q4 196 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 TP53RKQ96S44 253 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 CBLN4Q9NTU7 201 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 MRPL16Q9NX20 251 aaKnown RBP2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 OR5AC2Q9NZP5 309 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 BAIAP2Q9UQB8 552 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 HHLA3Q9XRX5 114 aa2.89□□□□□ -1.95
CCDC88A-206ENST00000430086 ROCK2O75116 1388 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 SMG6Q86US8 1419 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 MEIKINA0A087WXM9 373 aa2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 METTL15P1P0C7V9 234 aa2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 S100PP25815 95 aa2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 RPL22P35268 128 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 FUSP35637 526 aaKnown RBP eCLIP2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 RRAS2P62070 204 aaPredicted RBP2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 LSM3P62310 102 aaKnown RBP2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 WFDC11Q8NEX6 87 aa2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 OR5A2Q8NGI9 324 aa2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 OR4K15Q8NH41 348 aa2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 BRK1Q8WUW1 75 aa2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 LINC00467Q9BRT7 94 aa2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 ERG28Q9UKR5 140 aa2.88□□□□□ -1.95
CCDC88A-206ENST00000430086 THADAQ6YHU6 1953 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 DISP2A7MBM2 1401 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 ECM29Q5VYK3 1845 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 FAM25AB3EWG3 89 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 FAM25CB3EWG5 89 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 FAM25GB3EWG6 89 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 RER1O15258 196 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 CPSF4O95639 269 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 MT-ND6P03923 174 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 AAED1Q7RTV5 226 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 DEFB128Q7Z7B8 93 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 TEX29Q8N6K0 151 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 OR4B1Q8NGF8 309 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 OR5H6Q8NGV6 325 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 MRPS24Q96EL2 167 aaKnown RBP2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 PRELID3AQ96N28 172 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 LPAR5Q9H1C0 372 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 MINOS1-NBL1R4GNA1 71 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 COL27A1Q8IZC6 1860 aaPredicted RBP2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 PLXND1Q9Y4D7 1925 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 MAST2Q6P0Q8 1798 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 UBR2Q8IWV8 1755 aa2.87□□□□□ -1.95
CCDC88A-206ENST00000430086 ZNF106Q9H2Y7 1883 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 A0A0J9YX75 114 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 TRBV27A0A0K0K1C4 114 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 A8MWV9 139 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 MT-ND4LP03901 98 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 ZNF705BP0CI00 300 aaPredicted RBP2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 RPS25P62851 125 aaKnown RBP2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 DYNLT1P63172 113 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 TMEM244Q5VVB8 128 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 SOSTDC1Q6X4U4 206 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 Q8NDZ9 215 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 CMTM2Q8TAZ6 248 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 HSPE1-MOB4S4R3N1 261 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 MYH10P35580 1976 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 SCN4AP35499 1836 aa2.86□□□□□ -1.95
CCDC88A-206ENST00000430086 CEP164Q9UPV0 1460 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 IGHV3-64A0A075B6Q5 118 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 NCR2O95944 276 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 IFNGP01579 166 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 TSPAN19P0C672 248 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 COPZ1P61923 177 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 HES1Q14469 280 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 NEDD8Q15843 81 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 HSD17B12Q53GQ0 312 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 GLYATL3Q5SZD4 288 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 FAM27BQ5VT28 67 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 Q5XG85 94 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 CTAGE3PQ8IX95 158 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 TCEAL7Q9BRU2 100 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 LINC00470Q9BZP3 86 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 BCL2L10Q9HD36 194 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 R4GN34 69 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 GPR179Q6PRD1 2367 aa2.85□□□□□ -1.95
CCDC88A-206ENST00000430086 ARHGEF11O15085 1522 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 IGHV1-18A0A0C4DH31 117 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 OR2T8A6NH00 312 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 K7ERJ3 54 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 TIMM17BO60830 172 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 GPX1P07203 203 aa2.84□□□□□ -1.95
CCDC88A-206ENST00000430086 RNASE2P10153 161 aaKnown RBP2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms