RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 GSN-AS1Q9NRJ2 163 aa12.61□□□□□ -0.39
PTPRF-206ENST00000429895 H0YJW9 148 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 BTCP35070 178 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 TMEM155Q4W5P6 130 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 C14orf178Q8N769 122 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-206ENST00000429895 NABP1Q96AH0 204 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 ZNF625Q96I27 306 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-206ENST00000429895 GNB1LQ9BYB4 327 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 ID3Q02535 119 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 SPSB3Q6PJ21 355 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 PDCD11Q14690 1871 aaKnown RBP12.6□□□□□ -0.39
PTPRF-206ENST00000429895 F8VVB4 439 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 F8VWA3 439 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 LY6G6FQ5SQ64 297 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 ORAOV1Q8WV07 137 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 RNF166Q96A37 237 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-206ENST00000429895 LRRC37AA6NMS7 1700 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 LINC00205P59089 165 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 CHCHD1Q96BP2 118 aaKnown RBP12.6□□□□□ -0.39
PTPRF-206ENST00000429895 PATJQ8NI35 1801 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 PLXNA1Q9UIW2 1896 aa12.6□□□□□ -0.39
PTPRF-206ENST00000429895 LCN12Q6JVE5 192 aa12.59□□□□□ -0.39
PTPRF-206ENST00000429895 DTX1Q86Y01 620 aa12.59□□□□□ -0.39
PTPRF-206ENST00000429895 CSTL1Q9H114 145 aa12.59□□□□□ -0.39
PTPRF-206ENST00000429895 RNF114Q9Y508 228 aa12.59□□□□□ -0.39
PTPRF-206ENST00000429895 NAA38Q9BRA0 125 aaKnown RBP12.59□□□□□ -0.39
PTPRF-206ENST00000429895 RASL10AQ92737 203 aa12.59□□□□□ -0.39
PTPRF-206ENST00000429895 RHPN1-AS1Q9BWJ2 59 aa12.59□□□□□ -0.39
PTPRF-206ENST00000429895 MS4A6AQ9H2W1 248 aa12.59□□□□□ -0.39
PTPRF-206ENST00000429895 HGFACQ04756 655 aa12.59□□□□□ -0.39
PTPRF-206ENST00000429895 GFI1Q99684 422 aa12.59□□□□□ -0.39
PTPRF-206ENST00000429895 A8MXK9 166 aa12.59□□□□□ -0.39
PTPRF-206ENST00000429895 M0R1W7 72 aa12.58□□□□□ -0.39
PTPRF-206ENST00000429895 TMEM238C9JI98 176 aa12.58□□□□□ -0.4
PTPRF-206ENST00000429895 SAA4P35542 130 aa12.58□□□□□ -0.4
PTPRF-206ENST00000429895 ZNF479Q96JC4 524 aa12.58□□□□□ -0.4
PTPRF-206ENST00000429895 MSRB2Q9Y3D2 182 aa12.58□□□□□ -0.4
PTPRF-206ENST00000429895 A8MWV9 139 aa12.58□□□□□ -0.4
PTPRF-206ENST00000429895 RALGAPA1Q6GYQ0 2036 aa12.58□□□□□ -0.4
PTPRF-206ENST00000429895 PRR30Q53SZ7 412 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-206ENST00000429895 ZNF48Q96MX3 618 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-206ENST00000429895 ZNF236Q9UL36 1845 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 C5orf63A6NC05 138 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 GATA4P43694 442 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 C9orf139Q6ZV77 190 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 OVOL3O00110 214 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 ARHGEF17Q96PE2 2063 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-206ENST00000429895 SMKR1H3BMG3 65 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 ZNF362Q5T0B9 420 aaPredicted RBP12.57□□□□□ -0.4
PTPRF-206ENST00000429895 ESPL1Q14674 2120 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 DEFB131AP59861 70 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 PRTN3P24158 256 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 MST1P26927 711 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 Q5PR19 223 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 TRGV9Q99603 122 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 C1QTNF4Q9BXJ3 329 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 CACNA1IQ9P0X4 2223 aa12.57□□□□□ -0.4
PTPRF-206ENST00000429895 FAM223BA6NKX1 122 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 CD5P06127 495 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 SLC25A16P16260 332 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 FAM223AQ8IWN6 122 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 SAMD5Q5TGI4 173 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 USMG5Q96IX5 58 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 Q96MF0 132 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 RFNGQ9Y644 331 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 LINC00477Q96M19 166 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 NRXN2Q9P2S2 1712 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 KNCNA6PVL3 124 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 SS18Q15532 418 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 BMPERQ8N8U9 685 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 ANAPC13Q9BS18 74 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 FBLN5Q9UBX5 448 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 SCN10AQ9Y5Y9 1956 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 OOSP1A8MZH6 123 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 FAM110DQ8TAY7 271 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-206ENST00000429895 PSME4Q14997 1843 aa12.56□□□□□ -0.4
PTPRF-206ENST00000429895 F5H768 121 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 PSG3Q16557 428 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 SIGLEC9Q9Y336 463 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 DOCK3Q8IZD9 2030 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 TRAV8-1A0A0A6YYK1 113 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 XCL2Q9UBD3 114 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 C1orf122Q6ZSJ8 110 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 BRCA1P38398 1863 aaKnown RBP12.55□□□□□ -0.4
PTPRF-206ENST00000429895 LINC00473A8K010 186 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 VCYO14598 125 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 MDS2Q8NDY4 140 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 BRWD3Q6RI45 1802 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 IGHV3-16A0A0C4DH30 117 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 PLEKHB2Q96CS7 222 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 KLHDC3Q9BQ90 382 aa12.55□□□□□ -0.4
PTPRF-206ENST00000429895 SSBP2P81877 361 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-206ENST00000429895 SPXQ9BT56 116 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 ITGB1BP1O14713 200 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 DKK1O94907 266 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 CHD5Q8TDI0 1954 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 HIST1H2BKO60814 126 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 HIST1H2BJP06899 126 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 HIST1H2BOP23527 126 aa12.54□□□□□ -0.4
PTPRF-206ENST00000429895 HIST1H2BBP33778 126 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms