RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 IGKCP01834 107 aa7.63□□□□□ -1.19
COL28A1-201ENST00000399429 ARMS2P0C7Q2 107 aa7.63□□□□□ -1.19
COL28A1-201ENST00000399429 FAM201AQ5SY85 155 aa7.63□□□□□ -1.19
COL28A1-201ENST00000399429 SIT1Q9Y3P8 196 aa7.63□□□□□ -1.19
COL28A1-201ENST00000399429 F8W1H4 67 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 SMKR1H3BMG3 65 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 EVI2AP22794 236 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 IL11RAQ14626 422 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 SPANXN1Q5VSR9 72 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 HES7Q9BYE0 225 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 METRNQ9UJH8 293 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 KLF13Q9Y2Y9 288 aaPredicted RBP7.62□□□□□ -1.19
COL28A1-201ENST00000399429 CACNA1BQ00975 2339 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 DPM2O94777 84 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 SAA2P0DJI9 122 aaPredicted RBP7.62□□□□□ -1.19
COL28A1-201ENST00000399429 RPL11P62913 178 aaKnown RBP7.62□□□□□ -1.19
COL28A1-201ENST00000399429 COL4A4P53420 1690 aaPredicted RBP7.62□□□□□ -1.19
COL28A1-201ENST00000399429 A0A1B0GW15 77 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 CFHR2P36980 270 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 MEOX1P50221 254 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 CFHR1Q03591 330 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 EXOC3-AS1Q8N2X6 119 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 VKORC1Q9BQB6 163 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 ZNF576Q9H609 170 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 OBSL1O75147 1896 aa7.62□□□□□ -1.19
COL28A1-201ENST00000399429 SCGB1A1P11684 91 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 TNFRSF1AP19438 455 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 DLX1P56177 255 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 HERVK_113P61574 105 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 SLC25A48Q6ZT89 311 aaKnown RBP7.61□□□□□ -1.19
COL28A1-201ENST00000399429 AMN1Q8IY45 258 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 CACNG8Q8WXS5 425 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 C1RLQ9NZP8 487 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 C2CD4DB7Z1M9 353 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 FOXL2NBQ6ZUU3 175 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 ZNF329Q86UD4 541 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 PGPEP1Q9NXJ5 209 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 CGB1A6NKQ9 187 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 SAA1P0DJI8 122 aaPredicted RBP7.61□□□□□ -1.19
COL28A1-201ENST00000399429 RPL27AP46776 148 aaKnown RBP7.61□□□□□ -1.19
COL28A1-201ENST00000399429 TNFAIP6P98066 277 aaPredicted RBP7.61□□□□□ -1.19
COL28A1-201ENST00000399429 KLF5Q13887 457 aaPredicted RBP7.61□□□□□ -1.19
COL28A1-201ENST00000399429 C10orf55Q5SWW7 151 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 C1orf122Q6ZSJ8 110 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 CITED1Q99966 193 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 PMS2P5A8MQ11 134 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 A8MWV9 139 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 COX6A1P12074 109 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 ZNF747Q9BV97 191 aa7.61□□□□□ -1.19
COL28A1-201ENST00000399429 PLXNB1O43157 2135 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 EML5Q05BV3 1969 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 UPK2O00526 184 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 PRCDQ00LT1 54 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 SMIM20Q8N5G0 67 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 Q8N976 141 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 RAXQ9Y2V3 346 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 F5H697 171 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 TCRAP04437 139 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 TMEM178AQ8NBL3 297 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 CCL17Q92583 94 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 TTTY13Q9BZ97 58 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 TCRBV4S1A1TA0A5B7 111 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 PRSS2P07478 247 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 MGPP08493 103 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 KLF17Q5JT82 389 aaPredicted RBP7.6□□□□□ -1.19
COL28A1-201ENST00000399429 LINC00470Q9BZP3 86 aa7.6□□□□□ -1.19
COL28A1-201ENST00000399429 KLK10O43240 276 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 CCL11P51671 97 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 DLX4Q92988 240 aaPredicted RBP7.59□□□□□ -1.19
COL28A1-201ENST00000399429 UBTD1Q9HAC8 227 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 S4R3C0 116 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 TMEM262E9PQX1 116 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 ATP5LO75964 103 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 COX7A1P24310 79 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 FER1L6-AS2Q96M78 137 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 TTTY12Q9BZ98 90 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 ZNF256Q9Y2P7 627 aaPredicted RBP7.59□□□□□ -1.19
COL28A1-201ENST00000399429 PCDH15Q96QU1 1955 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 TRGV8A0A0C4DH27 118 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 A0A1W2PQM1 296 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 FAM90A9PA6NNJ1 464 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 NDUFB3O43676 98 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 ATP5IP56385 69 aaPredicted RBP7.59□□□□□ -1.19
COL28A1-201ENST00000399429 LYZL1Q6UWQ5 148 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 FAM231DQ6ZW35 169 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 ITLN1Q8WWA0 313 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 DKK2Q9UBU2 259 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 PROCRQ9UNN8 238 aa7.59□□□□□ -1.19
COL28A1-201ENST00000399429 NUP210Q8TEM1 1887 aaPredicted RBP7.58□□□□□ -1.2
COL28A1-201ENST00000399429 COL4A6Q14031 1691 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 COL8A2P25067 703 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 GCSAMQ8N6F7 178 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 RNF7Q9UBF6 113 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 PSG8Q9UQ74 426 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 MED13LQ71F56 2210 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 DSCAML1Q8TD84 2053 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 TRBV20-1A0A075B6N2 111 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 IGHV3-35A0A0C4DH35 117 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 AHRRA9YTQ3 701 aa7.58□□□□□ -1.2
COL28A1-201ENST00000399429 LGALS7P47929 136 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms