RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 NUP35Q8NFH5 326 aa12.21□□□□□ -0.45
UPF3B-202ENST00000345865 RCHY1Q96PM5 261 aa12.21□□□□□ -0.45
UPF3B-202ENST00000345865 M0R1W7 72 aa12.21□□□□□ -0.46
UPF3B-202ENST00000345865 SLAQ13239 276 aa12.21□□□□□ -0.46
UPF3B-202ENST00000345865 Q71RC1 249 aaPredicted RBP12.21□□□□□ -0.46
UPF3B-202ENST00000345865 REC114Q7Z4M0 266 aa12.21□□□□□ -0.46
UPF3B-202ENST00000345865 NPBQ8NG41 125 aa12.21□□□□□ -0.46
UPF3B-202ENST00000345865 NEU4Q8WWR8 484 aaPredicted RBP12.21□□□□□ -0.46
UPF3B-202ENST00000345865 RASL11BQ9BPW5 248 aa12.21□□□□□ -0.46
UPF3B-202ENST00000345865 ATG101Q9BSB4 218 aa12.21□□□□□ -0.46
UPF3B-202ENST00000345865 MRPL27Q9P0M9 148 aaKnown RBP12.21□□□□□ -0.46
UPF3B-202ENST00000345865 RNF114Q9Y508 228 aa12.21□□□□□ -0.46
UPF3B-202ENST00000345865 S4R3C0 116 aa12.21□□□□□ -0.46
UPF3B-202ENST00000345865 A6NNC1 897 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 TCRAP04437 139 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 ZFP36P26651 326 aaKnown RBP12.2□□□□□ -0.46
UPF3B-202ENST00000345865 C5orf17Q8NAS9 161 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 GRAMD2BQ96HH9 432 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 SRSF8Q9BRL6 282 aaKnown RBP12.2□□□□□ -0.46
UPF3B-202ENST00000345865 NAGKQ9UJ70 344 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 POLR3KQ9Y2Y1 108 aaPredicted RBP12.2□□□□□ -0.46
UPF3B-202ENST00000345865 CDKN1AP38936 164 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 TPPP2P59282 170 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 PAFAH1B2P68402 229 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 LY6DQ14210 128 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 LURAP1LQ8IV03 231 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 GPR82Q96P67 336 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 HSPB9Q9BQS6 159 aa12.2□□□□□ -0.46
UPF3B-202ENST00000345865 AKAP6Q13023 2319 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 SRIP30626 198 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 RPL19P84098 196 aaKnown RBP12.19□□□□□ -0.46
UPF3B-202ENST00000345865 HES1Q14469 280 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 DTX2Q86UW9 622 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 EXOC3-AS1Q8N2X6 119 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 NEU1Q99519 415 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 TRAV8-1A0A0A6YYK1 113 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 HIGD1CA8MV81 97 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 TOMM40O96008 361 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 LTAP01374 205 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 HLA-DQA1P01909 254 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 CEACAM3P40198 252 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 C5orf64Q2M2E5 130 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 COX19Q49B96 90 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 VMO1Q7Z5L0 202 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 BCL6BQ8N143 479 aaPredicted RBP12.19□□□□□ -0.46
UPF3B-202ENST00000345865 C17orf77Q96MU5 243 aa12.19□□□□□ -0.46
UPF3B-202ENST00000345865 PRB4P10163 310 aaPredicted RBP12.18□□□□□ -0.46
UPF3B-202ENST00000345865 NDPQ00604 133 aa12.18□□□□□ -0.46
UPF3B-202ENST00000345865 USF2Q15853 346 aaPredicted RBP12.18□□□□□ -0.46
UPF3B-202ENST00000345865 PRR31Q5SQ13 230 aa12.18□□□□□ -0.46
UPF3B-202ENST00000345865 WIPF2Q8TF74 440 aaPredicted RBP12.18□□□□□ -0.46
UPF3B-202ENST00000345865 TSKUQ8WUA8 353 aa12.18□□□□□ -0.46
UPF3B-202ENST00000345865 NOL4LQ96MY1 436 aaPredicted RBP12.18□□□□□ -0.46
UPF3B-202ENST00000345865 ZNF331Q9NQX6 463 aaPredicted RBP12.18□□□□□ -0.46
UPF3B-202ENST00000345865 TOX4O94842 621 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 APCSP02743 223 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 TDRG1Q3Y452 100 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 OR10J3Q5JRS4 329 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 ZNF491Q8N8L2 437 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 RBM14Q96PK6 669 aaKnown RBP12.17□□□□□ -0.46
UPF3B-202ENST00000345865 FANCD2OSQ96PS1 177 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 TMEM14CQ9P0S9 112 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 ZNF253O75346 499 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 GPX1P07203 203 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 HIST1H1EP10412 219 aaKnown RBP12.17□□□□□ -0.46
UPF3B-202ENST00000345865 TCF24Q7RTU0 167 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 FMC1Q96HJ9 113 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 PRSS22Q9GZN4 317 aa12.17□□□□□ -0.46
UPF3B-202ENST00000345865 A0A1W2PS18 150 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 IGLV2-11P01706 119 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 SMIM12Q96EX1 92 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 TMEM68Q96MH6 324 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 TBX15Q96SF7 602 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 SAMD10Q9BYL1 202 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 CELSR1Q9NYQ6 3014 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 COL12A1Q99715 3063 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 C19orf71A6NCJ1 209 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 HOXB4P17483 251 aaPredicted RBP12.16□□□□□ -0.46
UPF3B-202ENST00000345865 BRS3P32247 399 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 KIR3DL3Q8N743 410 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 GTSF1Q8WW33 167 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 SHANK2-AS3Q9BTD1 123 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 SSBP4Q9BWG4 385 aaPredicted RBP12.16□□□□□ -0.46
UPF3B-202ENST00000345865 OTORQ9NRC9 128 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 FBXL7Q9UJT9 491 aa12.16□□□□□ -0.46
UPF3B-202ENST00000345865 ZNF705FA8MVS1 300 aaPredicted RBP12.15□□□□□ -0.46
UPF3B-202ENST00000345865 F8W735 103 aaPredicted RBP12.15□□□□□ -0.46
UPF3B-202ENST00000345865 ZNF705DP0CH99 300 aaPredicted RBP12.15□□□□□ -0.46
UPF3B-202ENST00000345865 ZNF705BP0CI00 300 aaPredicted RBP12.15□□□□□ -0.46
UPF3B-202ENST00000345865 GPR6P46095 362 aaPredicted RBP12.15□□□□□ -0.46
UPF3B-202ENST00000345865 C1orf194Q5T5A4 169 aa12.15□□□□□ -0.46
UPF3B-202ENST00000345865 Q8N6K4 173 aa12.15□□□□□ -0.46
UPF3B-202ENST00000345865 NDUFAF3Q9BU61 184 aa12.15□□□□□ -0.46
UPF3B-202ENST00000345865 H3BRN7 92 aa12.15□□□□□ -0.46
UPF3B-202ENST00000345865 IL4P05112 153 aa12.15□□□□□ -0.46
UPF3B-202ENST00000345865 RASL11AQ6T310 242 aa12.15□□□□□ -0.46
UPF3B-202ENST00000345865 ZNF562Q6V9R5 426 aa12.15□□□□□ -0.46
UPF3B-202ENST00000345865 CIARTQ8N365 385 aaPredicted RBP12.15□□□□□ -0.46
UPF3B-202ENST00000345865 RNF125Q96EQ8 232 aa12.15□□□□□ -0.46
UPF3B-202ENST00000345865 IGLV11-55A0A075B6I3 123 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms