RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 VSIG2Q96IQ7 327 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 SPRY4Q9C004 299 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 A0A0U1RRA0 63 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 IGKV1-39P01597 117 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 IGKV1D-39P04432 117 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 DUTP33316 252 aaKnown RBP3.33□□□□□ -1.88
NEDD4-201ENST00000338963 IFI27P40305 119 aaPredicted RBP3.33□□□□□ -1.88
NEDD4-201ENST00000338963 Q8N8P6 123 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 RAXQ9Y2V3 346 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 ANKRD31Q8N7Z5 1873 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 RBAKDNA6NC62 111 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 BCE1O60756 84 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 P0C879 139 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 UBE2D1P51668 147 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 TXNDC8Q6A555 127 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 NDUFA11Q86Y39 141 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 OVOL2Q9BRP0 275 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 PEMTQ9UBM1 199 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 FAM236DA0A1B0GTK5 79 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 TMEM30CPA0ZSE6 113 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 TCL1BO95988 128 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 LTAP01374 205 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 FAM236CP0DP71 79 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 CKS2P33552 79 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 FAM53BQ14153 422 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 ODF3Q96PU9 254 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 OTORQ9NRC9 128 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 CALYQ9NYX4 217 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 A0A0J9YW62 118 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 LOC107984640A0A0U1RRK4 108 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 LOC101059948A0A1B0GTJ6 334 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 FRMD6-AS1P0C7T7 363 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 ORMDL2Q53FV1 153 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 SSMEM1Q8WWF3 244 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 S1PR3Q99500 378 aa3.33□□□□□ -1.88
NEDD4-201ENST00000338963 ZFC3H1O60293 1989 aaKnown RBP3.33□□□□□ -1.88
NEDD4-201ENST00000338963 A0A1W2PPC4 97 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 ZNF815PA8K554 130 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 CD164Q04900 197 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 ATP5EP2Q5VTU8 51 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 A0A0U1RQV1 116 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 C4orf51C9J302 202 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 PRSS46E5RG02 174 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 PRRG2O14669 202 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 LYZL6O75951 148 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 LIFP15018 202 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 PRDX2P32119 198 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 GDF5OSQ5U4N7 250 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 RPS19BP1Q86WX3 136 aaKnown RBP3.32□□□□□ -1.88
NEDD4-201ENST00000338963 DAND5Q8N907 189 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 SPINT2O43291 252 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 RPL35AP18077 110 aaKnown RBP3.32□□□□□ -1.88
NEDD4-201ENST00000338963 PIGYQ3MUY2 71 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 PRDM6Q9NQX0 595 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 SELENOKQ9Y6D0 94 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 TMSB15BA0A087X1C1 80 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 LINC01546A6NGU7 62 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 ZNF561-AS1K7EIQ3 104 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 FAM90A1Q86YD7 464 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 RNF152Q8N8N0 203 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 ZNF503Q96F45 646 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 COX14Q96I36 57 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 FOXB1Q99853 325 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 PYGO1Q9Y3Y4 419 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 YLPM1P49750 1951 aaKnown RBP3.32□□□□□ -1.88
NEDD4-201ENST00000338963 C19orf71A6NCJ1 209 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 PPP1R17O96001 155 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 NXPH1P58417 271 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 SHANK2-AS3Q9BTD1 123 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 LINC00527Q9UJ94 153 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 BUB3O43684 328 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 COL8A2P25067 703 aa3.32□□□□□ -1.88
NEDD4-201ENST00000338963 TRGV11A0A075B6L2 103 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 LYRM9A8MSI8 78 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 TCRAP04437 139 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 ASPHD1Q5U4P2 390 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 STRCQ7RTU9 1775 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 COL16A1Q07092 1604 aaPredicted RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 H0YGG7 62 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 CT62P0C5K7 136 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 TNFRSF4P43489 277 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 DLX1P56177 255 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 RPL18AQ02543 176 aaKnown RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 LOXL1Q08397 574 aaPredicted RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 TMEM30BQ3MIR4 351 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 FAM27BQ5VT28 67 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 Q86TA4 180 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 MDP1Q86V88 176 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 CRIPAKQ8N1N5 446 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 NABP1Q96AH0 204 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 TMEM243Q9BU79 118 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 DEPPQ9NTK1 212 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 PKIGQ9Y2B9 76 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 TRGV5A0A0B4J1U4 118 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 IGKV1-8A0A0C4DH67 115 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 RBMY1BA6NDE4 496 aaKnown RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 RBMY1EA6NEQ0 496 aaKnown RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 SRRM4A7MD48 611 aaKnown RBP3.31□□□□□ -1.88
NEDD4-201ENST00000338963 A8MZ25 164 aa3.31□□□□□ -1.88
NEDD4-201ENST00000338963 J3QQQ9 107 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms