RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NABP1Q96AH0 204 aa11.59□□□□□ -0.55
CCDC88A-201ENST00000263630 TAL2Q16559 108 aa11.58□□□□□ -0.56
CCDC88A-201ENST00000263630 TEX38Q6PEX7 206 aa11.58□□□□□ -0.56
CCDC88A-201ENST00000263630 SHANK1Q9Y566 2161 aa11.58□□□□□ -0.56
CCDC88A-201ENST00000263630 RPP25Q9BUL9 199 aaKnown RBP11.58□□□□□ -0.56
CCDC88A-201ENST00000263630 TRPT1Q86TN4 253 aaKnown RBP11.58□□□□□ -0.56
CCDC88A-201ENST00000263630 KLRD1Q13241 179 aa11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 OCC1Q8TAD7 63 aa11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 RNF166Q96A37 237 aaPredicted RBP11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 IL17RELQ6ZVW7 336 aa11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 C18orf12Q96KH6 178 aa11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 CRLF1O75462 422 aa11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 TMEM141Q96I45 108 aa11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 MRPL27Q9P0M9 148 aaKnown RBP11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 C17orf100A8MU93 164 aa11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 SYS1-DBNDD2H3BUS1 97 aa11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 TRBV25-1A0A075B6N4 114 aa11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 SCRT1Q9BWW7 348 aa11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 MBNL3Q9NUK0 354 aaKnown RBP11.57□□□□□ -0.56
CCDC88A-201ENST00000263630 COL22A1Q8NFW1 1626 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 GATA2P23769 480 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 LILRA6Q6PI73 481 aa11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 ANKRD29Q8N6D5 301 aa11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 RNF114Q9Y508 228 aa11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 PEBP1P30086 187 aaKnown RBP11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 USMG5Q96IX5 58 aa11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 C9orf139Q6ZV77 190 aa11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 PLCE1Q9P212 2302 aa11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 H3BQ85 93 aa11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 TEX48A0A1B0GUV7 120 aa11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 KLF5Q13887 457 aaPredicted RBP11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 ARID2Q68CP9 1835 aa11.56□□□□□ -0.56
CCDC88A-201ENST00000263630 COX6A1P12074 109 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 TCF15Q12870 199 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 LYPD1Q8N2G4 141 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 SPATA25Q9BR10 227 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 A0A0G2JK05 382 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 RPL35AP18077 110 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 SUPT4H1P63272 117 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 SCRT2Q9NQ03 307 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 LOC105371267A0A1B0GV96 52 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 TMEM158Q8WZ71 300 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 LIME1Q9H400 295 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 FBLN5Q9UBX5 448 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 RALGAPA2Q2PPJ7 1873 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 ZNF831Q5JPB2 1677 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 IGKV2-40A0A087WW87 121 aaPredicted RBP11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 IGKV2D-40P01614 121 aaPredicted RBP11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 AMBPP02760 352 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 ATP6V0BQ99437 205 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 PYYP10082 97 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 CECR9P0C854 216 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 MORN2Q502X0 79 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 IGHG2P01859 326 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 CELA2AP08217 269 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 IL9P15248 144 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 MP68P56378 58 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 C15orf32Q32M92 178 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 RNASE6Q93091 150 aaKnown RBP11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 PLXND1Q9Y4D7 1925 aa11.55□□□□□ -0.56
CCDC88A-201ENST00000263630 IGHV2OR16-5A0A0B4J2B6 119 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 ZNF497Q6ZNH5 498 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 TRAV12-1A0A0B4J245 112 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 SPSB2Q99619 263 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 C1QTNF5Q9BXJ0 243 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 GAS1P54826 345 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 TRBV24-1A0A075B6N3 115 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 FUSP35637 526 aaKnown RBP eCLIP11.54□□□□□ -0.562e-9■□□□□ 9.5
CCDC88A-201ENST00000263630 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 RTBDNQ9BSG5 229 aaPredicted RBP11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 TNCP24821 2201 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 HIST3H2BBQ8N257 126 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 hDV102S1A0JD36 115 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 RHODO00212 210 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 TBX6O95947 436 aaPredicted RBP11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 SMRP1Q8NCR6 262 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 AMELYQ99218 206 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 FAM223BA6NKX1 122 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 FOXG1P55316 489 aaPredicted RBP11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 FAM223AQ8IWN6 122 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 STPG4Q8N801 248 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 TRGV9Q99603 122 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 CTSBP07858 339 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 FAM181AQ8N9Y4 354 aa11.54□□□□□ -0.56
CCDC88A-201ENST00000263630 WFDC9Q8NEX5 89 aa11.53□□□□□ -0.56
CCDC88A-201ENST00000263630 PMS2P5A8MQ11 134 aa11.53□□□□□ -0.56
CCDC88A-201ENST00000263630 LINC00271P0C7V0 271 aa11.53□□□□□ -0.56
CCDC88A-201ENST00000263630 FBLIM1Q8WUP2 373 aa11.53□□□□□ -0.56
CCDC88A-201ENST00000263630 LYZL1Q6UWQ5 148 aa11.53□□□□□ -0.56
CCDC88A-201ENST00000263630 CRIM1Q9NZV1 1036 aa11.53□□□□□ -0.56
CCDC88A-201ENST00000263630 BOD1L2Q8IYS8 172 aa11.53□□□□□ -0.56
CCDC88A-201ENST00000263630 C8orf31Q8N9H6 132 aa11.53□□□□□ -0.56
CCDC88A-201ENST00000263630 RAMP3O60896 148 aa11.53□□□□□ -0.56
CCDC88A-201ENST00000263630 NAA38Q9BRA0 125 aaKnown RBP11.52□□□□□ -0.56
CCDC88A-201ENST00000263630 NHSQ6T4R5 1651 aa11.52□□□□□ -0.56
CCDC88A-201ENST00000263630 SHISA9B4DS77 424 aa11.52□□□□□ -0.56
CCDC88A-201ENST00000263630 FAM216BQ8N7L0 139 aa11.52□□□□□ -0.56
CCDC88A-201ENST00000263630 TMEM52Q8NDY8 209 aa11.52□□□□□ -0.57
CCDC88A-201ENST00000263630 CENPVL1A0A0U1RR11 272 aa11.52□□□□□ -0.57
CCDC88A-201ENST00000263630 TRBV6-7A0A0A0MS04 114 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms