RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 LIFP15018 202 aa4.17□□□□□ -1.74
VPS13D-214ENST00000620676 EBLN2Q6P2I7 272 aa4.17□□□□□ -1.74
VPS13D-214ENST00000620676 Q6ZR03 302 aa4.17□□□□□ -1.74
VPS13D-214ENST00000620676 PKIBQ9C010 78 aa4.17□□□□□ -1.74
VPS13D-214ENST00000620676 ZNF329Q86UD4 541 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 DEFB125Q8N687 156 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 C11orf68Q9H3H3 251 aaKnown RBP4.16□□□□□ -1.74
VPS13D-214ENST00000620676 FNDC10F2Z333 226 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 DLL1O00548 723 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 TMEM196Q5HYL7 178 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 FAM27BQ5VT28 67 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 COL6A6A6NMZ7 2263 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 SBF2Q86WG5 1849 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 ZNF688P0C7X2 276 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 ATXN8Q156A1 80 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 IGKV1-12A0A0C4DH73 117 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 IGKV1D-12P01611 117 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 NDPQ00604 133 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 AMN1Q8IY45 258 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.16□□□□□ -1.74
VPS13D-214ENST00000620676 MYO9AB2RTY4 2548 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 TTC28Q96AY4 2481 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 IGHV1-24A0A0C4DH33 117 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 C12orf77C9JDV5 145 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 ECSCRQ19T08 205 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 ACP7Q6ZNF0 438 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 C8orf86Q6ZUL3 223 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 NEGR1Q7Z3B1 354 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 SP7Q8TDD2 431 aaPredicted RBP4.16□□□□□ -1.74
VPS13D-214ENST00000620676 NPIPB6E9PJ23 425 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 ERCC8Q13216 396 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 FOXA2Q9Y261 457 aaPredicted RBP4.16□□□□□ -1.74
VPS13D-214ENST00000620676 KLF13Q9Y2Y9 288 aaPredicted RBP4.16□□□□□ -1.74
VPS13D-214ENST00000620676 COL16A1Q07092 1604 aaPredicted RBP4.16□□□□□ -1.74
VPS13D-214ENST00000620676 ATP5L2Q7Z4Y8 100 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 C8orf46Q8TAG6 207 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 V9GYV3 84 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 TRAV41A0A0B4J266 112 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 CCDC179H3BU77 68 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 IL18BPO95998 194 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 SRD5A1P18405 259 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 TIMM23O14925 209 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 GUSBP11Q6P575 273 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 TREML4Q6UXN2 200 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 PHIPQ8WWQ0 1821 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 OSR1Q8TAX0 266 aaPredicted RBP4.16□□□□□ -1.74
VPS13D-214ENST00000620676 BTAF1O14981 1849 aa4.16□□□□□ -1.74
VPS13D-214ENST00000620676 LHFPL1Q86WI0 220 aa4.15□□□□□ -1.74
VPS13D-214ENST00000620676 TMEM158Q8WZ71 300 aa4.15□□□□□ -1.74
VPS13D-214ENST00000620676 ZNF764Q96H86 408 aaPredicted RBP4.15□□□□□ -1.74
VPS13D-214ENST00000620676 LINC01549A6NIU2 74 aa4.15□□□□□ -1.74
VPS13D-214ENST00000620676 SPATA12Q7Z6I5 190 aa4.15□□□□□ -1.74
VPS13D-214ENST00000620676 Q8TAT8 98 aa4.15□□□□□ -1.74
VPS13D-214ENST00000620676 BRWD3Q6RI45 1802 aa4.15□□□□□ -1.74
VPS13D-214ENST00000620676 ZNRF1Q8ND25 227 aa4.15□□□□□ -1.74
VPS13D-214ENST00000620676 DUX3Q96PT4 197 aa4.15□□□□□ -1.74
VPS13D-214ENST00000620676 ARHGAP21Q5T5U3 1957 aa4.15□□□□□ -1.74
VPS13D-214ENST00000620676 CALYQ9NYX4 217 aa4.15□□□□□ -1.74
VPS13D-214ENST00000620676 IGHV3-73A0A0B4J1V6 119 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 LTAP01374 205 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 FHL1Q13642 323 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 LAGE3Q14657 143 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 OR10J6PQ8NGY7 276 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 FGF11Q92914 225 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 IGHV3OR16-12A0A075B7B8 117 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 F8W1H4 67 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 CDX4O14627 284 aaPredicted RBP4.15□□□□□ -1.75
VPS13D-214ENST00000620676 RAC3P60763 192 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 SRSF1Q07955 248 aaKnown RBP eCLIP4.15□□□□□ -1.753e-6■■■■□ 22.3
VPS13D-214ENST00000620676 C12orf74Q32Q52 190 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 PRR33A8MZF0 331 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 DRD3P35462 400 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 FMC1Q96HJ9 113 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 TRBV7-9A0A0J9YWB2 115 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 KLRC4-KLRK1H3BQV0 150 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 TRPT1Q86TN4 253 aaKnown RBP4.15□□□□□ -1.75
VPS13D-214ENST00000620676 IGHV3OR16-10A0A075B7F0 116 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 FCN3O75636 299 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 LMO1P25800 156 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 CCL8P80075 99 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 PAX9P55771 341 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 ATP5J2P56134 94 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 ZFP36L1Q07352 338 aaKnown RBP4.15□□□□□ -1.75
VPS13D-214ENST00000620676 TMEM92Q6UXU6 159 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 CEND1Q8N111 149 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 DENND4AQ7Z401 1863 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 C10orf35Q96D05 121 aa4.15□□□□□ -1.75
VPS13D-214ENST00000620676 LINC00114Q6XXX2 140 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 PROCRQ9UNN8 238 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 PAX1P15863 534 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 ANK1P16157 1881 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 PKDREJQ9NTG1 2253 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 TRAV12-1A0A0B4J245 112 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 M0QXV9 152 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 MPV17P39210 176 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 IDI2-AS1Q9NZ38 188 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 PSG8Q9UQ74 426 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 SLC25A16P16260 332 aa4.14□□□□□ -1.75
VPS13D-214ENST00000620676 ZNF658BQ4V348 819 aaPredicted RBP4.14□□□□□ -1.75
VPS13D-214ENST00000620676 PI4KAP42356 2102 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms