RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TRGV9Q99603 122 aa10.63□□□□□ -0.71
SHKBP1-217ENST00000598558 GINS3Q9BRX5 216 aa10.63□□□□□ -0.71
SHKBP1-217ENST00000598558 NMES1Q9C002 83 aa10.63□□□□□ -0.71
SHKBP1-217ENST00000598558 DNAH9Q9NYC9 4486 aa10.63□□□□□ -0.71
SHKBP1-217ENST00000598558 TRAV25A0A0B4J276 109 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 TSPAN4O14817 238 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 DEDDO75618 318 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 CST7O76096 145 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 IGHV4-30-4P0DP06 118 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 BCAP31P51572 246 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 CAV2P51636 162 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 DLK1P80370 383 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 FCN2Q15485 313 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 RGS21Q2M5E4 152 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 LRRC37A5PQ49AS3 106 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 TMEM144Q7Z5S9 345 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 TMEM252Q8N6L7 170 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 OR10P1Q8NGE3 313 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 NEURL2Q9BR09 285 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 SMAD5-AS1Q9Y6J3 95 aa10.62□□□□□ -0.71
SHKBP1-217ENST00000598558 IGKV3-7A0A075B6H7 116 aa10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 SMCO3A2RU48 225 aa10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 CD81P60033 236 aa10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 RBPMS2Q6ZRY4 209 aaKnown RBP10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 TCF24Q7RTU0 167 aa10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 DEFB125Q8N687 156 aa10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 OR11H7Q8NGC8 314 aa10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 PPP1R1CQ8WVI7 109 aa10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 METTL26Q96S19 204 aa10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 ASCL2Q99929 193 aa10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 LYRM2Q9NU23 88 aaPredicted RBP10.61□□□□□ -0.71
SHKBP1-217ENST00000598558 SCGB2A1O75556 95 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 HNRNPCP07910 306 aaKnown RBP eCLIP10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 FRMD6-AS1P0C7T7 363 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 AKR1C1Q04828 323 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 C16orf54Q6UWD8 224 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 GBGT1Q8N5D6 347 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 TMEM217Q8N7C4 229 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 RNF125Q96EQ8 232 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 CITED4Q96RK1 184 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 B9D2Q9BPU9 175 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 PBDC1Q9BVG4 233 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 SORL1Q92673 2214 aa10.6□□□□□ -0.71
SHKBP1-217ENST00000598558 FNDC10F2Z333 226 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 P2RY1P47900 373 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 TFPI2P48307 235 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 LYZP61626 148 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 CYCSP99999 105 aaKnown RBP10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 NHLH2Q02577 135 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 SLC38A11Q08AI6 406 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 LAMTOR1Q6IAA8 161 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 CYP2G1PQ6ZSU1 146 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 GTSCR1Q86UQ5 136 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 SBSPONQ8IVN8 264 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 FAM24BQ8N5W8 94 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 GLMPQ8WWB7 406 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 SPAG8Q99932 426 aaPredicted RBP10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 NPVFQ9HCQ7 196 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 UBQLN2Q9UHD9 624 aa10.59□□□□□ -0.71
SHKBP1-217ENST00000598558 RBMY1BA6NDE4 496 aaKnown RBP10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 RBMY1EA6NEQ0 496 aaKnown RBP10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 A8MZ25 164 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 OR11H12B2RN74 326 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 BUB3O43684 328 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 MPC2O95563 127 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 RBMY1DP0C7P1 496 aaKnown RBP10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 PVALBP20472 110 aaPredicted RBP10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 SULT1A1P50225 295 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 ODF3L2Q3SX64 289 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 Q5BKY6 102 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 LINC00322Q6ZN03 302 aaPredicted RBP10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 WFDC3Q8IUB2 231 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 GGACTQ9BVM4 153 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 MED28Q9H204 178 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 MS4A6AQ9H2W1 248 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 RABAC1Q9UI14 185 aa10.58□□□□□ -0.72
SHKBP1-217ENST00000598558 E5RGE8 158 aa10.57□□□□□ -0.72
SHKBP1-217ENST00000598558 EIF2B2P49770 351 aaKnown RBP10.57□□□□□ -0.72
SHKBP1-217ENST00000598558 EWSR1Q01844 656 aaKnown RBP eCLIP10.57□□□□□ -0.72
SHKBP1-217ENST00000598558 ZNF124Q15973 351 aa10.57□□□□□ -0.72
SHKBP1-217ENST00000598558 VWC2Q2TAL6 325 aa10.57□□□□□ -0.72
SHKBP1-217ENST00000598558 C17orf77Q96MU5 243 aa10.57□□□□□ -0.72
SHKBP1-217ENST00000598558 MGST2Q99735 147 aa10.57□□□□□ -0.72
SHKBP1-217ENST00000598558 SLC45A2Q9UMX9 530 aa10.57□□□□□ -0.72
SHKBP1-217ENST00000598558 TGP01266 2768 aa10.57□□□□□ -0.72
SHKBP1-217ENST00000598558 A0A1W2PS18 150 aa10.56□□□□□ -0.72
SHKBP1-217ENST00000598558 AGPAT2O15120 278 aa10.56□□□□□ -0.72
SHKBP1-217ENST00000598558 RLN2P04090 185 aa10.56□□□□□ -0.72
SHKBP1-217ENST00000598558 LINC00869P0C866 280 aa10.56□□□□□ -0.72
SHKBP1-217ENST00000598558 ORM2P19652 201 aa10.56□□□□□ -0.72
SHKBP1-217ENST00000598558 TEPPQ6URK8 271 aa10.56□□□□□ -0.72
SHKBP1-217ENST00000598558 PATE2Q6UY27 113 aa10.56□□□□□ -0.72
SHKBP1-217ENST00000598558 DOK5Q9P104 306 aa10.56□□□□□ -0.72
SHKBP1-217ENST00000598558 WDR83OSQ9Y284 106 aa10.56□□□□□ -0.72
SHKBP1-217ENST00000598558 OR4C46A6NHA9 309 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 K7EQG2 157 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 FABP1P07148 127 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 LYL1P12980 280 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 S100A11P31949 105 aa10.55□□□□□ -0.72
SHKBP1-217ENST00000598558 RPL11P62913 178 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms