RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 TMEM116Q8NCL8 245 aa7.7□□□□□ -1.18
LIG1-213ENST00000596672 IL17DQ8TAD2 202 aa7.7□□□□□ -1.18
LIG1-213ENST00000596672 RNF183Q96D59 192 aa7.7□□□□□ -1.18
LIG1-213ENST00000596672 C2orf50Q96LR7 162 aa7.7□□□□□ -1.18
LIG1-213ENST00000596672 TXN2Q99757 166 aa7.7□□□□□ -1.18
LIG1-213ENST00000596672 MAP6D1Q9H9H5 199 aa7.7□□□□□ -1.18
LIG1-213ENST00000596672 PUS1Q9Y606 427 aaKnown RBP eCLIP7.7□□□□□ -1.18
LIG1-213ENST00000596672 HERC2O95714 4834 aa7.69□□□□□ -1.18
LIG1-213ENST00000596672 TRAV14DV4A0A0A6YYC5 116 aa7.69□□□□□ -1.18
LIG1-213ENST00000596672 B3GALNT1O75752 331 aa7.69□□□□□ -1.18
LIG1-213ENST00000596672 DFFBO76075 338 aa7.69□□□□□ -1.18
LIG1-213ENST00000596672 M6PRP20645 277 aa7.69□□□□□ -1.18
LIG1-213ENST00000596672 AKR1C2P52895 323 aa7.69□□□□□ -1.18
LIG1-213ENST00000596672 AP2S1P53680 142 aaPredicted RBP7.69□□□□□ -1.18
LIG1-213ENST00000596672 CYCSP99999 105 aaKnown RBP7.69□□□□□ -1.18
LIG1-213ENST00000596672 FAM219AQ8IW50 185 aa7.69□□□□□ -1.18
LIG1-213ENST00000596672 CCDC28AQ8IWP9 274 aa7.69□□□□□ -1.18
LIG1-213ENST00000596672 RBPMSQ93062 196 aaKnown RBP7.69□□□□□ -1.18
LIG1-213ENST00000596672 NMES1Q9C002 83 aa7.69□□□□□ -1.18
LIG1-213ENST00000596672 FXYD6-FXYD2A0A087WZ82 144 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 CYB5BO43169 146 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 SPRY2O43597 315 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 GNG7O60262 68 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 IFNA17P01571 189 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 ERHP84090 104 aaKnown RBP7.68□□□□□ -1.18
LIG1-213ENST00000596672 TIGITQ495A1 244 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 CLLU1Q5K131 121 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 TEX261Q6UWH6 196 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 Q6ZWC4 215 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 TCF24Q7RTU0 167 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 RNASE11Q8TAA1 199 aaKnown RBP7.68□□□□□ -1.18
LIG1-213ENST00000596672 PPP1R1CQ8WVI7 109 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 IL22RA2Q969J5 263 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 CACNG5Q9UF02 275 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 TMED3Q9Y3Q3 217 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 U3KQ87 197 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 U3KQE9 123 aa7.68□□□□□ -1.18
LIG1-213ENST00000596672 OR4C46A6NHA9 309 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 CLN5O75503 358 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 MPC2O95563 127 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 SCGB1D2O95969 90 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 S100A10P60903 97 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 RELQ04864 619 aaPredicted RBP7.67□□□□□ -1.18
LIG1-213ENST00000596672 FGL1Q08830 312 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 IL15RAQ13261 267 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 RAB32Q13637 225 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 LGALSLQ3ZCW2 172 aaPredicted RBP7.67□□□□□ -1.18
LIG1-213ENST00000596672 PRSS54Q6PEW0 395 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 ZNF680Q8NEM1 530 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 THAP6Q8TBB0 222 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 RNF126Q9BV68 326 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 MS4A6AQ9H2W1 248 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 TP53TG1Q9Y2A0 90 aa7.67□□□□□ -1.18
LIG1-213ENST00000596672 LSM5Q9Y4Y9 91 aaKnown RBP7.67□□□□□ -1.18
LIG1-213ENST00000596672 KIR2DL5BA0A0G2JN68 375 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 KIR2DL5BA0A0G2JPC4 375 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 DUXBA0A1W2PPF3 345 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 H0YIZ8 118 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 TSC22D2O75157 780 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 MBPP02686 304 aaPredicted RBP7.66□□□□□ -1.18
LIG1-213ENST00000596672 IGLC1P0CG04 106 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 SLC25A4P12235 298 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 CXCL2P19875 107 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 SNCAP37840 140 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 HOXA1P49639 335 aaPredicted RBP7.66□□□□□ -1.18
LIG1-213ENST00000596672 SPCS3P61009 180 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 PMS2P11Q13670 270 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 NMSQ5H8A3 153 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 LEMD1Q68G75 181 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 ZNF600Q6ZNG1 722 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 ZNF546Q86UE3 836 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 KIR2DL5AQ8N109 375 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 OR4X1Q8NH49 305 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 OR52E5Q8NH55 327 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 KIR2DL5BQ8NHK3 375 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 SUN5Q8TC36 379 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 RRNAD1Q96FB5 475 aaKnown RBP7.66□□□□□ -1.18
LIG1-213ENST00000596672 OR5AC2Q9NZP5 309 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 MBD2Q9UBB5 411 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 FAT2Q9NYQ8 4349 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 KIAA1109Q2LD37 5005 aa7.66□□□□□ -1.18
LIG1-213ENST00000596672 HMSDA8MTL9 139 aa7.65□□□□□ -1.18
LIG1-213ENST00000596672 K7EQG2 157 aa7.65□□□□□ -1.18
LIG1-213ENST00000596672 ARPC5O15511 151 aa7.65□□□□□ -1.18
LIG1-213ENST00000596672 CRYBB3P26998 211 aa7.65□□□□□ -1.18
LIG1-213ENST00000596672 NPBWR1P48145 328 aa7.65□□□□□ -1.18
LIG1-213ENST00000596672 DEFB131AP59861 70 aa7.65□□□□□ -1.18
LIG1-213ENST00000596672 USF2Q15853 346 aaPredicted RBP7.65□□□□□ -1.18
LIG1-213ENST00000596672 C2orf83Q53S99 150 aa7.65□□□□□ -1.18
LIG1-213ENST00000596672 STPG3Q8N7X2 389 aa7.65□□□□□ -1.18
LIG1-213ENST00000596672 OR4D5Q8NGN0 318 aa7.65□□□□□ -1.18
LIG1-213ENST00000596672 OR1S1Q8NH92 325 aa7.65□□□□□ -1.18
LIG1-213ENST00000596672 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.65□□□□□ -1.18
LIG1-213ENST00000596672 PIGBOS1A0A0B4J2F0 54 aa7.64□□□□□ -1.19
LIG1-213ENST00000596672 KNCNA6PVL3 124 aa7.64□□□□□ -1.19
LIG1-213ENST00000596672 K7EPK0 472 aa7.64□□□□□ -1.19
LIG1-213ENST00000596672 L7N2F9 121 aa7.64□□□□□ -1.19
LIG1-213ENST00000596672 UBE2CO00762 179 aa7.64□□□□□ -1.19
LIG1-213ENST00000596672 DEFB4AO15263 64 aa7.64□□□□□ -1.19
LIG1-213ENST00000596672 ATG12O94817 140 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms