RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 LYG2Q86SG7 212 aa20.66■□□□□ 0.9
LIG3-208ENST00000586407 PBDC1Q9BVG4 233 aa20.66■□□□□ 0.9
LIG3-208ENST00000586407 CSTL1Q9H114 145 aa20.66■□□□□ 0.9
LIG3-208ENST00000586407 H3BP45 60 aa20.65■□□□□ 0.9
LIG3-208ENST00000586407 MED6O75586 246 aa20.65■□□□□ 0.9
LIG3-208ENST00000586407 GPX4P36969 197 aaPredicted RBP20.65■□□□□ 0.9
LIG3-208ENST00000586407 ATP5IP56385 69 aaPredicted RBP20.65■□□□□ 0.9
LIG3-208ENST00000586407 RAB11AP62491 216 aa20.65■□□□□ 0.9
LIG3-208ENST00000586407 DCANP1Q8TF63 244 aa20.65■□□□□ 0.9
LIG3-208ENST00000586407 CENPXA8MT69 81 aa20.64■□□□□ 0.89
LIG3-208ENST00000586407 PLA2G10O15496 165 aa20.64■□□□□ 0.89
LIG3-208ENST00000586407 OR2F1Q13607 317 aa20.64■□□□□ 0.89
LIG3-208ENST00000586407 C4orf46Q504U0 113 aa20.64■□□□□ 0.89
LIG3-208ENST00000586407 LCE6AA0A183 80 aa20.63■□□□□ 0.89
LIG3-208ENST00000586407 KNCNA6PVL3 124 aa20.63■□□□□ 0.89
LIG3-208ENST00000586407 COQ8AQ8NI60 647 aa20.63■□□□□ 0.89
LIG3-208ENST00000586407 IL17DQ8TAD2 202 aa20.63■□□□□ 0.89
LIG3-208ENST00000586407 RNF125Q96EQ8 232 aa20.63■□□□□ 0.89
LIG3-208ENST00000586407 C7orf50Q9BRJ6 194 aaKnown RBP20.63■□□□□ 0.89
LIG3-208ENST00000586407 POLR2GP62487 172 aaKnown RBP eCLIP20.62■□□□□ 0.89
LIG3-208ENST00000586407 SPANXN5Q5MJ07 72 aa20.62■□□□□ 0.89
LIG3-208ENST00000586407 CIB3Q96Q77 187 aaPredicted RBP20.62■□□□□ 0.89
LIG3-208ENST00000586407 HELTA6NFD8 242 aa20.61■□□□□ 0.89
LIG3-208ENST00000586407 PRSS46E5RG02 174 aa20.61■□□□□ 0.89
LIG3-208ENST00000586407 BUB3O43684 328 aa20.61■□□□□ 0.89
LIG3-208ENST00000586407 CA1P00915 261 aaPredicted RBP20.61■□□□□ 0.89
LIG3-208ENST00000586407 LYZP61626 148 aa20.61■□□□□ 0.89
LIG3-208ENST00000586407 PMS2P11Q13670 270 aa20.61■□□□□ 0.89
LIG3-208ENST00000586407 GSG1LQ6UXU4 331 aa20.61■□□□□ 0.89
LIG3-208ENST00000586407 IGKV1OR2-108A0A075B7D4 117 aa20.6■□□□□ 0.89
LIG3-208ENST00000586407 EIF2B2P49770 351 aaKnown RBP20.59■□□□□ 0.89
LIG3-208ENST00000586407 OR4D5Q8NGN0 318 aa20.59■□□□□ 0.89
LIG3-208ENST00000586407 C20orf85Q9H1P6 137 aa20.59■□□□□ 0.89
LIG3-208ENST00000586407 LYRM1O43325 122 aa20.58■□□□□ 0.89
LIG3-208ENST00000586407 ID3Q02535 119 aa20.58■□□□□ 0.89
LIG3-208ENST00000586407 PSMG4Q5JS54 123 aa20.58■□□□□ 0.89
LIG3-208ENST00000586407 SIGLEC15Q6ZMC9 328 aa20.58■□□□□ 0.89
LIG3-208ENST00000586407 STHQ8IWL8 128 aa20.58■□□□□ 0.89
LIG3-208ENST00000586407 TRGV9Q99603 122 aa20.58■□□□□ 0.89
LIG3-208ENST00000586407 SSSCA1O60232 199 aa20.57■□□□□ 0.88
LIG3-208ENST00000586407 IFNA21P01568 189 aa20.57■□□□□ 0.88
LIG3-208ENST00000586407 ACTL10Q5JWF8 245 aa20.57■□□□□ 0.88
LIG3-208ENST00000586407 THAP8Q8NA92 274 aa20.57■□□□□ 0.88
LIG3-208ENST00000586407 STRAPQ9Y3F4 350 aaKnown RBP20.57■□□□□ 0.88
LIG3-208ENST00000586407 SCGB1D2O95969 90 aa20.56■□□□□ 0.88
LIG3-208ENST00000586407 NKX2-1P43699 371 aaPredicted RBP20.56■□□□□ 0.88
LIG3-208ENST00000586407 RPP30P78346 268 aaKnown RBP20.56■□□□□ 0.88
LIG3-208ENST00000586407 ACOT7LQ6ZUV0 252 aa20.56■□□□□ 0.88
LIG3-208ENST00000586407 TRPT1Q86TN4 253 aaKnown RBP20.56■□□□□ 0.88
LIG3-208ENST00000586407 TRAV6A0A075B6T7 132 aa20.55■□□□□ 0.88
LIG3-208ENST00000586407 CXorf65A6NEN9 183 aa20.55■□□□□ 0.88
LIG3-208ENST00000586407 CCNKO75909 580 aa20.55■□□□□ 0.88
LIG3-208ENST00000586407 AP2S1P53680 142 aaPredicted RBP20.55■□□□□ 0.88
LIG3-208ENST00000586407 RARRES2Q99969 163 aa20.55■□□□□ 0.88
LIG3-208ENST00000586407 NRN1Q9NPD7 142 aa20.55■□□□□ 0.88
LIG3-208ENST00000586407 PSENENQ9NZ42 101 aa20.55■□□□□ 0.88
LIG3-208ENST00000586407 GIG44P09565 113 aaPredicted RBP20.54■□□□□ 0.88
LIG3-208ENST00000586407 C4BPBP20851 252 aa20.54■□□□□ 0.88
LIG3-208ENST00000586407 GATA2P23769 480 aaPredicted RBP20.54■□□□□ 0.88
LIG3-208ENST00000586407 IAH1Q2TAA2 248 aaPredicted RBP20.54■□□□□ 0.88
LIG3-208ENST00000586407 OR8G2PQ6IF36 304 aa20.54■□□□□ 0.88
LIG3-208ENST00000586407 OR11H2Q8NH07 326 aa20.54■□□□□ 0.88
LIG3-208ENST00000586407 RYR2Q92736 4967 aa20.54■□□□□ 0.88
LIG3-208ENST00000586407 SACSQ9NZJ4 4579 aa20.54■□□□□ 0.88
LIG3-208ENST00000586407 SNRPGP15A8MWD9 76 aa20.53■□□□□ 0.88
LIG3-208ENST00000586407 CCSO14618 274 aa20.53■□□□□ 0.88
LIG3-208ENST00000586407 TCRBP04435 133 aa20.53■□□□□ 0.88
LIG3-208ENST00000586407 FABP1P07148 127 aa20.53■□□□□ 0.88
LIG3-208ENST00000586407 AKR1C1Q04828 323 aa20.53■□□□□ 0.88
LIG3-208ENST00000586407 TMEM182Q6ZP80 229 aaPredicted RBP20.53■□□□□ 0.88
LIG3-208ENST00000586407 GATAD1Q8WUU5 269 aa20.53■□□□□ 0.88
LIG3-208ENST00000586407 MITD1Q8WV92 249 aa20.53■□□□□ 0.88
LIG3-208ENST00000586407 DEFB4AO15263 64 aa20.52■□□□□ 0.88
LIG3-208ENST00000586407 PAX9P55771 341 aa20.52■□□□□ 0.88
LIG3-208ENST00000586407 DEFB1P60022 68 aa20.52■□□□□ 0.88
LIG3-208ENST00000586407 ZBTB8BQ8NAP8 495 aaPredicted RBP20.52■□□□□ 0.88
LIG3-208ENST00000586407 PPP1R14BQ96C90 147 aa20.52■□□□□ 0.88
LIG3-208ENST00000586407 RAB40CQ96S21 281 aa20.52■□□□□ 0.88
LIG3-208ENST00000586407 SEC22CQ9BRL7 303 aa20.52■□□□□ 0.88
LIG3-208ENST00000586407 GSKIPQ9P0R6 139 aa20.52■□□□□ 0.88
LIG3-208ENST00000586407 SMCO3A2RU48 225 aa20.51■□□□□ 0.87
LIG3-208ENST00000586407 CNPY1Q3B7I2 92 aa20.51■□□□□ 0.87
LIG3-208ENST00000586407 WDR12Q9GZL7 423 aaKnown RBP20.51■□□□□ 0.87
LIG3-208ENST00000586407 NUDT15Q9NV35 164 aa20.51■□□□□ 0.87
LIG3-208ENST00000586407 LYSTQ99698 3801 aa20.5■□□□□ 0.87
LIG3-208ENST00000586407 PMS2P5A8MQ11 134 aa20.5■□□□□ 0.87
LIG3-208ENST00000586407 CCDC32Q9BV29 185 aa20.5■□□□□ 0.87
LIG3-208ENST00000586407 METTL15P1P0C7V9 234 aa20.49■□□□□ 0.87
LIG3-208ENST00000586407 NUP62P37198 522 aaPredicted RBP20.49■□□□□ 0.87
LIG3-208ENST00000586407 RRAS2P62070 204 aaPredicted RBP20.49■□□□□ 0.87
LIG3-208ENST00000586407 SMIM8Q96KF7 97 aa20.49■□□□□ 0.87
LIG3-208ENST00000586407 CLEC5AQ9NY25 188 aa20.49■□□□□ 0.87
LIG3-208ENST00000586407 RCL1Q9Y2P8 373 aaKnown RBP20.49■□□□□ 0.87
LIG3-208ENST00000586407 SNRPD3P62318 126 aaKnown RBP20.48■□□□□ 0.87
LIG3-208ENST00000586407 PFDN2Q9UHV9 154 aa20.48■□□□□ 0.87
LIG3-208ENST00000586407 TBC1D24Q9ULP9 559 aa20.47■□□□□ 0.87
LIG3-208ENST00000586407 JTBO76095 146 aa20.46■□□□□ 0.87
LIG3-208ENST00000586407 MBPP02686 304 aaPredicted RBP20.46■□□□□ 0.87
LIG3-208ENST00000586407 ORM2P19652 201 aa20.46■□□□□ 0.87
LIG3-208ENST00000586407 TMEM14EPQ6UXP3 125 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms