RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 GNG7O60262 68 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 FCGR2BP31994 310 aaPredicted RBP11.17□□□□□ -0.62
LIG3-205ENST00000585941 RAB5BP61020 215 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 LOXL1Q08397 574 aaPredicted RBP11.17□□□□□ -0.62
LIG3-205ENST00000585941 ELOBQ15370 118 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 UNQ5815/PRO19632Q6UWF5 114 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 BRD3OSQ6XYD6 125 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 LINC01551Q86U37 167 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 C21orf62Q9NYP8 219 aa11.17□□□□□ -0.62
LIG3-205ENST00000585941 UTP20O75691 2785 aaKnown RBP11.16□□□□□ -0.62
LIG3-205ENST00000585941 A0A0U1RQK1 487 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 H7BYZ3 331 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 IGHV4-38-2P0DP08 117 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 LYZP61626 148 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 KLF17Q5JT82 389 aaPredicted RBP11.16□□□□□ -0.62
LIG3-205ENST00000585941 OR5T1Q8NG75 326 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 FXYD5Q96DB9 178 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 OR5B12Q96R08 314 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 HSPB9Q9BQS6 159 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 DERL1Q9BUN8 251 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 TMUB1Q9BVT8 246 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 GSX1Q9H4S2 264 aaPredicted RBP11.16□□□□□ -0.62
LIG3-205ENST00000585941 MRPL27Q9P0M9 148 aaKnown RBP11.16□□□□□ -0.62
LIG3-205ENST00000585941 RNF24Q9Y225 148 aa11.16□□□□□ -0.62
LIG3-205ENST00000585941 IGHV3OR16-10A0A075B7F0 116 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 A0A096LNT2 108 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 GGTLC3B5MD39 225 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 M0QZK8 103 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 ATP6V0E1O15342 81 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 TGOLN2O43493 480 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 S100PP25815 95 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 SUMO1P63165 101 aaKnown RBP11.15□□□□□ -0.62
LIG3-205ENST00000585941 DEFB113Q30KQ7 82 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 C1QL4Q86Z23 238 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 PIFOQ8TCI5 191 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 SSX3Q99909 188 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 GAR1Q9NY12 217 aaKnown RBP11.15□□□□□ -0.62
LIG3-205ENST00000585941 TMEM14CQ9P0S9 112 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 PITPNC1Q9UKF7 332 aa11.15□□□□□ -0.62
LIG3-205ENST00000585941 TRBV24-1A0A075B6N3 115 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 HELTA6NFD8 242 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 PYYP10082 97 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 S100A7P31151 101 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 CRIP2P52943 208 aaPredicted RBP11.14□□□□□ -0.63
LIG3-205ENST00000585941 Q56UQ5 140 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 Q8WTZ3 238 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 SLC25A39Q9BZJ4 359 aaPredicted RBP11.14□□□□□ -0.63
LIG3-205ENST00000585941 FBXL7Q9UJT9 491 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 CRYBG3Q68DQ2 2970 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 WI2-2373I1.2A0A1W2PRP0 233 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 OR2J3O76001 311 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 NDUFB8O95169 186 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 CRYBB3P26998 211 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 RPL35P42766 123 aaKnown RBP11.14□□□□□ -0.63
LIG3-205ENST00000585941 C2CD4CQ8TF44 421 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 RNF125Q96EQ8 232 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 BTF3L4Q96K17 158 aa11.14□□□□□ -0.63
LIG3-205ENST00000585941 USP9YO00507 2555 aaPredicted RBP11.13□□□□□ -0.63
LIG3-205ENST00000585941 TRBV20OR9-2A0A075B6H5 130 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 MDFIC2A0A1B0GVS7 189 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 NBEAP1P0C6P0 100 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 GP9P14770 177 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 SRP14P37108 136 aaKnown RBP11.13□□□□□ -0.63
LIG3-205ENST00000585941 ECSCRQ19T08 205 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 ZNF343Q6P1L6 599 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 ZNF491Q8N8L2 437 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 NECAP1Q8NC96 275 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 IMMP2LQ96T52 175 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 SHANK2-AS3Q9BTD1 123 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 URGCP-MRPS24S4R325 110 aa11.13□□□□□ -0.63
LIG3-205ENST00000585941 TRBV9A0A0B4J1U6 114 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 A6NDX4 124 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 GALR1P47211 349 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 GNG4P50150 75 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 TAS2R60P59551 318 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 PRSS57Q6UWY2 283 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 OCC1Q8TAD7 63 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 MBD6Q96DN6 1003 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 SFRP2Q96HF1 295 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 ATP6V0BQ99437 205 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 ELOVL1Q9BW60 279 aa11.12□□□□□ -0.63
LIG3-205ENST00000585941 F8W735 103 aaPredicted RBP11.11□□□□□ -0.63
LIG3-205ENST00000585941 H3BRN7 92 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 IL4P05112 153 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 PFN1P07737 140 aaKnown RBP11.11□□□□□ -0.63
LIG3-205ENST00000585941 HIST1H1EP10412 219 aaKnown RBP11.11□□□□□ -0.63
LIG3-205ENST00000585941 MYCNOSP40205 109 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 RPS10P46783 165 aaKnown RBP11.11□□□□□ -0.63
LIG3-205ENST00000585941 CNN1P51911 297 aaKnown RBP11.11□□□□□ -0.63
LIG3-205ENST00000585941 KCNIP4Q6PIL6 250 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 ZNF329Q86UD4 541 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 TMEM219Q86XT9 240 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 BPIFA4PQ86YQ2 179 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 FAM210BQ96KR6 192 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 BIN3Q9NQY0 253 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 CDC42EP3Q9UKI2 254 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 PTPN13Q12923 2485 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 H3BUX3 64 aa11.11□□□□□ -0.63
LIG3-205ENST00000585941 S100A9P06702 114 aaKnown RBP11.11□□□□□ -0.63
LIG3-205ENST00000585941 CXCL1P09341 107 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms