RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TNS1Q9HBL0 1735 aaKnown RBP2.59□□□□□ -2
VPS35-208ENST00000568612 PLXNA2O75051 1894 aa2.58□□□□□ -2
VPS35-208ENST00000568612 LCTP09848 1927 aa2.58□□□□□ -2
VPS35-208ENST00000568612 EXPH5Q8NEV8 1989 aa2.58□□□□□ -2
VPS35-208ENST00000568612 IGLV5-37A0A075B6J1 123 aa2.58□□□□□ -2
VPS35-208ENST00000568612 TRAV4A0A0B4J268 109 aa2.58□□□□□ -2
VPS35-208ENST00000568612 C3orf85A0A1B0GTC6 90 aa2.58□□□□□ -2
VPS35-208ENST00000568612 A0A1W2PPK0 400 aa2.58□□□□□ -2
VPS35-208ENST00000568612 C15orf61A6NNL5 157 aa2.58□□□□□ -2
VPS35-208ENST00000568612 OOSP1A8MZH6 123 aa2.58□□□□□ -2
VPS35-208ENST00000568612 J3QLW9 94 aa2.58□□□□□ -2
VPS35-208ENST00000568612 BMPR1BO00238 502 aa2.58□□□□□ -2
VPS35-208ENST00000568612 PLPP1O14494 284 aa2.58□□□□□ -2
VPS35-208ENST00000568612 BUB3O43684 328 aa2.58□□□□□ -2
VPS35-208ENST00000568612 RENP00797 406 aa2.58□□□□□ -2
VPS35-208ENST00000568612 LOXP28300 417 aaPredicted RBP2.58□□□□□ -2
VPS35-208ENST00000568612 MPV17P39210 176 aa2.58□□□□□ -2
VPS35-208ENST00000568612 LEPP41159 167 aa2.58□□□□□ -2
VPS35-208ENST00000568612 SSR4P51571 173 aa2.58□□□□□ -2
VPS35-208ENST00000568612 EFNB2P52799 333 aa2.58□□□□□ -2
VPS35-208ENST00000568612 CLDN2P57739 230 aa2.58□□□□□ -2
VPS35-208ENST00000568612 POLR2LP62875 67 aaKnown RBP2.58□□□□□ -2
VPS35-208ENST00000568612 ZNF90Q03938 601 aa2.58□□□□□ -2
VPS35-208ENST00000568612 ARL16Q0P5N6 197 aa2.58□□□□□ -2
VPS35-208ENST00000568612 HSPB3Q12988 150 aa2.58□□□□□ -2
VPS35-208ENST00000568612 RNPS1Q15287 305 aaKnown RBP2.58□□□□□ -2
VPS35-208ENST00000568612 RRN3P1Q2M238 152 aa2.58□□□□□ -2
VPS35-208ENST00000568612 KIAA2026Q5HYC2 2103 aa2.58□□□□□ -2
VPS35-208ENST00000568612 MS4A13Q5J8X5 152 aa2.58□□□□□ -2
VPS35-208ENST00000568612 CDC42EP5Q6NZY7 148 aa2.58□□□□□ -2
VPS35-208ENST00000568612 MORN3Q6PF18 240 aaPredicted RBP2.58□□□□□ -2
VPS35-208ENST00000568612 ACP7Q6ZNF0 438 aa2.58□□□□□ -2
VPS35-208ENST00000568612 Q6ZTC4 211 aa2.58□□□□□ -2
VPS35-208ENST00000568612 FAM231DQ6ZW35 169 aa2.58□□□□□ -2
VPS35-208ENST00000568612 SSX8Q7RTT4 187 aa2.58□□□□□ -2
VPS35-208ENST00000568612 HSD11B1LQ7Z5J1 315 aa2.58□□□□□ -2
VPS35-208ENST00000568612 NFE4Q86UQ8 179 aa2.58□□□□□ -2
VPS35-208ENST00000568612 LHFPL1Q86WI0 220 aa2.58□□□□□ -2
VPS35-208ENST00000568612 MED12LQ86YW9 2145 aa2.58□□□□□ -2
VPS35-208ENST00000568612 CLECL1Q8IZS7 167 aa2.58□□□□□ -2
VPS35-208ENST00000568612 EXOC3-AS1Q8N2X6 119 aa2.58□□□□□ -2
VPS35-208ENST00000568612 ANKRD29Q8N6D5 301 aa2.58□□□□□ -2
VPS35-208ENST00000568612 LRTM2Q8N967 370 aa2.58□□□□□ -2
VPS35-208ENST00000568612 FGF14Q92915 247 aa2.58□□□□□ -2
VPS35-208ENST00000568612 DNAJA3Q96EY1 480 aa2.58□□□□□ -2
VPS35-208ENST00000568612 TMEM59Q9BXS4 323 aa2.58□□□□□ -2
VPS35-208ENST00000568612 SLC39A9Q9NUM3 307 aa2.58□□□□□ -2
VPS35-208ENST00000568612 HIGD1BQ9P298 99 aa2.58□□□□□ -2
VPS35-208ENST00000568612 PYGO1Q9Y3Y4 419 aa2.58□□□□□ -2
VPS35-208ENST00000568612 SELENOKQ9Y6D0 94 aa2.58□□□□□ -2
VPS35-208ENST00000568612 ANAPC1Q9H1A4 1944 aa2.58□□□□□ -2
VPS35-208ENST00000568612 DOCK3Q8IZD9 2030 aa2.58□□□□□ -2
VPS35-208ENST00000568612 COL4A4P53420 1690 aaPredicted RBP2.57□□□□□ -2
VPS35-208ENST00000568612 IGHV1-24A0A0C4DH33 117 aa2.57□□□□□ -2
VPS35-208ENST00000568612 A0A0J9YW62 118 aa2.57□□□□□ -2
VPS35-208ENST00000568612 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.57□□□□□ -2
VPS35-208ENST00000568612 RBAKDNA6NC62 111 aa2.57□□□□□ -2
VPS35-208ENST00000568612 FAM24AA6NFZ4 105 aa2.57□□□□□ -2
VPS35-208ENST00000568612 RIIAD1A6NNX1 92 aa2.57□□□□□ -2
VPS35-208ENST00000568612 IGLL5B9A064 214 aa2.57□□□□□ -2
VPS35-208ENST00000568612 LMO7DNF2Z398 122 aa2.57□□□□□ -2
VPS35-208ENST00000568612 NDUFS7O75251 213 aa2.57□□□□□ -2
VPS35-208ENST00000568612 ZFAND5O76080 213 aa2.57□□□□□ -2
VPS35-208ENST00000568612 CLDN14O95500 239 aa2.57□□□□□ -2
VPS35-208ENST00000568612 LGALS1P09382 135 aaKnown RBP2.57□□□□□ -2
VPS35-208ENST00000568612 P0DMU3 169 aa2.57□□□□□ -2
VPS35-208ENST00000568612 FAM231AP0DMU4 169 aa2.57□□□□□ -2
VPS35-208ENST00000568612 FAM231CP0DMU5 169 aa2.57□□□□□ -2
VPS35-208ENST00000568612 PSMB8P28062 276 aa2.57□□□□□ -2
VPS35-208ENST00000568612 NOVP48745 357 aa2.57□□□□□ -2
VPS35-208ENST00000568612 FXYD6P3P58550 94 aa2.57□□□□□ -2
VPS35-208ENST00000568612 ZNF726P1Q15940 193 aa2.57□□□□□ -2
VPS35-208ENST00000568612 ZNF672Q499Z4 452 aaPredicted RBP2.57□□□□□ -2
VPS35-208ENST00000568612 SERTAD4-AS1Q5TG53 156 aa2.57□□□□□ -2
VPS35-208ENST00000568612 LYRM7Q5U5X0 104 aa2.57□□□□□ -2
VPS35-208ENST00000568612 LINC01545Q5VT33 79 aa2.57□□□□□ -2
VPS35-208ENST00000568612 OR4C11Q6IEV9 310 aa2.57□□□□□ -2
VPS35-208ENST00000568612 GAGE2AQ6NT46 116 aa2.57□□□□□ -2
VPS35-208ENST00000568612 Q6P435 159 aa2.57□□□□□ -2
VPS35-208ENST00000568612 TRAPPC6BQ86SZ2 158 aa2.57□□□□□ -2
VPS35-208ENST00000568612 MOB3BQ86TA1 216 aa2.57□□□□□ -2
VPS35-208ENST00000568612 SBSPONQ8IVN8 264 aa2.57□□□□□ -2
VPS35-208ENST00000568612 FAM19A2Q8N3H0 131 aa2.57□□□□□ -2
VPS35-208ENST00000568612 RFLNBQ8N5W9 214 aa2.57□□□□□ -2
VPS35-208ENST00000568612 C3orf56Q8N813 242 aa2.57□□□□□ -2
VPS35-208ENST00000568612 NUP35Q8NFH5 326 aa2.57□□□□□ -2
VPS35-208ENST00000568612 OR2A1Q8NGT9 310 aa2.57□□□□□ -2
VPS35-208ENST00000568612 IL1F10Q8WWZ1 152 aa2.57□□□□□ -2
VPS35-208ENST00000568612 DLX4Q92988 240 aaPredicted RBP2.57□□□□□ -2
VPS35-208ENST00000568612 FAM3DQ96BQ1 224 aa2.57□□□□□ -2
VPS35-208ENST00000568612 NUS1Q96E22 293 aa2.57□□□□□ -2
VPS35-208ENST00000568612 DPH3Q96FX2 82 aa2.57□□□□□ -2
VPS35-208ENST00000568612 CARD19Q96LW7 228 aa2.57□□□□□ -2
VPS35-208ENST00000568612 GNG12Q9UBI6 72 aa2.57□□□□□ -2
VPS35-208ENST00000568612 PLXNB3Q9ULL4 1909 aa2.57□□□□□ -2
VPS35-208ENST00000568612 KIAA1549Q9HCM3 1950 aa2.57□□□□□ -2
VPS35-208ENST00000568612 HCFC1P51610 2035 aa2.56□□□□□ -2
VPS35-208ENST00000568612 NUMA1Q14980 2115 aa2.56□□□□□ -2
VPS35-208ENST00000568612 A0A1B0GUV1 79 aa2.56□□□□□ -2
VPS35-208ENST00000568612 C5orf63A6NC05 138 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms