RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 Q6ZSV7 163 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 C16orf82Q7Z2V1 217 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 REC114Q7Z4M0 266 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 BEND2Q8NDZ0 799 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 OR1L4Q8NGR5 311 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 C8orf46Q8TAG6 207 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 TMEM170AQ8WVE7 144 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 TMPRSS5Q9H3S3 457 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 SRD5A3Q9H8P0 318 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 NDUFA4L2Q9NRX3 87 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 TECRQ9NZ01 308 aaKnown RBP8.84□□□□□ -0.99
SHMT2-216ENST00000554975 ONECUT1Q9UBC0 465 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 FUT9Q9Y231 359 aa8.84□□□□□ -0.99
SHMT2-216ENST00000554975 TEX50A0A1B0GTY4 177 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 C9JCJ5 164 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 HMGB3O15347 200 aaKnown RBP8.83□□□□□ -1
SHMT2-216ENST00000554975 ACTL6BO94805 426 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 IGKV1-16P04430 117 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 OR5G3P0C626 314 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 S100A2P29034 98 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 TMEM86BQ8N661 226 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 TEX45Q8NA69 505 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 ZNF114Q8NC26 417 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 GATAD1Q8WUU5 269 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 ST6GALNAC6Q969X2 333 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 RNF5Q99942 180 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 SRSF8Q9BRL6 282 aaKnown RBP8.83□□□□□ -1
SHMT2-216ENST00000554975 PYGO2Q9BRQ0 406 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 CLEC7AQ9BXN2 247 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 ZNF430Q9H8G1 570 aaPredicted RBP8.83□□□□□ -1
SHMT2-216ENST00000554975 URGCP-MRPS24S4R325 110 aa8.83□□□□□ -1
SHMT2-216ENST00000554975 FCN3O75636 299 aa8.82□□□□□ -1
SHMT2-216ENST00000554975 IGHV4-59P01825 116 aa8.82□□□□□ -1
SHMT2-216ENST00000554975 TYMSP04818 313 aa8.82□□□□□ -1
SHMT2-216ENST00000554975 ZNF343Q6P1L6 599 aa8.82□□□□□ -1
SHMT2-216ENST00000554975 OR4P4Q8NGL7 312 aa8.82□□□□□ -1
SHMT2-216ENST00000554975 SSMEM1Q8WWF3 244 aa8.82□□□□□ -1
SHMT2-216ENST00000554975 TBX15Q96SF7 602 aa8.82□□□□□ -1
SHMT2-216ENST00000554975 DYNC2H1Q8NCM8 4307 aaKnown RBP8.81□□□□□ -1
SHMT2-216ENST00000554975 RYR2Q92736 4967 aa8.81□□□□□ -1
SHMT2-216ENST00000554975 TGIF2-C20orf24A0A0A6YYL0 155 aa8.81□□□□□ -1
SHMT2-216ENST00000554975 GGCTO75223 188 aaKnown RBP8.81□□□□□ -1
SHMT2-216ENST00000554975 EIF3GO75821 320 aaKnown RBP eCLIP8.81□□□□□ -1
SHMT2-216ENST00000554975 CXCL1P09341 107 aa8.81□□□□□ -1
SHMT2-216ENST00000554975 CDX1P47902 265 aaPredicted RBP8.81□□□□□ -1
SHMT2-216ENST00000554975 ATP5G3P48201 142 aa8.81□□□□□ -1
SHMT2-216ENST00000554975 FAM78BQ5VT40 261 aa8.81□□□□□ -1
SHMT2-216ENST00000554975 LINC01551Q86U37 167 aa8.81□□□□□ -1
SHMT2-216ENST00000554975 STXBP6Q8NFX7 210 aa8.81□□□□□ -1
SHMT2-216ENST00000554975 ABHD5Q8WTS1 349 aa8.81□□□□□ -1
SHMT2-216ENST00000554975 SIRPDQ9H106 197 aa8.81□□□□□ -1
SHMT2-216ENST00000554975 IGHV2-26A0A0B4J1V2 119 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 PFN1P07737 140 aaKnown RBP8.8□□□□□ -1
SHMT2-216ENST00000554975 C8orf88P0DMB2 117 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 HOXA5P20719 270 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 OR10J1P30954 320 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 CEACAM3P40198 252 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 RPL27AP46776 148 aaKnown RBP8.8□□□□□ -1
SHMT2-216ENST00000554975 UBE2G2P60604 165 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 RPL15P61313 204 aaKnown RBP8.8□□□□□ -1
SHMT2-216ENST00000554975 GNB1P62873 340 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 PRB3Q04118 309 aaPredicted RBP8.8□□□□□ -1
SHMT2-216ENST00000554975 DNLZQ5SXM8 178 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 VMO1Q7Z5L0 202 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 THAP8Q8NA92 274 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 OR51G1Q8NGK1 321 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 OR2T10Q8NGZ9 312 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 RPEQ96AT9 228 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 ACY3Q96HD9 319 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 KRTAP17-1Q9BYP8 105 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 C16orf95Q9H693 158 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 PITPNC1Q9UKF7 332 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 TNCP24821 2201 aa8.8□□□□□ -1
SHMT2-216ENST00000554975 TENM2Q9NT68 2774 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 CENPVL3A0A0U1RRI6 287 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 A0A1W2PRE2 83 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 TCRBV4S1A1TA0A5B7 111 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 SRRM4A7MD48 611 aaKnown RBP8.79□□□□□ -1
SHMT2-216ENST00000554975 M0R1W7 72 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 COX7A2P2O60397 106 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 OR7C2O60412 319 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST1H2BKO60814 126 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST1H2BJP06899 126 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 FABP1P07148 127 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST1H2BOP23527 126 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST1H2BBP33778 126 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST1H2BDP58876 126 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST1H2BCP62807 126 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST2H2BEQ16778 126 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 COX19Q49B96 90 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 GCSAMLQ5JQS6 135 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.79□□□□□ -1
SHMT2-216ENST00000554975 UTF1Q5T230 341 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 C11orf44Q8N8P7 122 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 OR1L6Q8NGR2 347 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST1H2BHQ93079 126 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST1H2BNQ99877 126 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 HIST1H2BMQ99879 126 aa8.79□□□□□ -1
SHMT2-216ENST00000554975 GAR1Q9NY12 217 aaKnown RBP8.79□□□□□ -1
SHMT2-216ENST00000554975 IGHV1-69DA0A0B4J2H0 117 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms