RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 C3orf22Q8N5N4 141 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 GDPD1Q8N9F7 314 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 ACBD4Q8NC06 268 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 GPR32P1Q8NGA4 272 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 OR51T1Q8NGJ9 327 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 RNASE11Q8TAA1 199 aaKnown RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 RNF133Q8WVZ7 376 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TNFRSF14Q92956 283 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM106AQ96A25 262 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 GALMQ96C23 342 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 C12orf43Q96C57 262 aaKnown RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 SMIM19Q96E16 107 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 REEP6Q96HR9 211 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PGLYRP3Q96LB9 341 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 Q96M85 177 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TBX5Q99593 518 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 NIPSNAP1Q9BPW8 284 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 SLC25A21Q9BQT8 299 aaPredicted RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 GINS4Q9BRT9 223 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TCEAL7Q9BRU2 100 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 FAAP24Q9BTP7 215 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PDCD10Q9BUL8 212 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF426Q9BUY5 554 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 OR2H1Q9GZK4 316 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PBOV1Q9GZY1 135 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 ATG5Q9H1Y0 275 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PLEKHJ1Q9NW61 149 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 FKBP11Q9NYL4 201 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 COMMD9Q9P000 198 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 OR5V1Q9UGF6 321 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 CYB5R1Q9UHQ9 305 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 MRM2Q9UI43 246 aaKnown RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 TRAPPC2LQ9UL33 140 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 SLC22A13Q9Y226 551 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 AMMECR1Q9Y4X0 333 aaPredicted RBP1.13□□□□□ -2.23
LIMA1-209ENST00000552008 MCM3APO60318 1980 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PLXNA3P51805 1871 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 NLRC5Q86WI3 1866 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 CACNA1DQ01668 2161 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 SHANK1Q9Y566 2161 aa1.13□□□□□ -2.23
LIMA1-209ENST00000552008 PATJQ8NI35 1801 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 DOCK5Q9H7D0 1870 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 IGHV3-15A0A0B4J1V0 119 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 IGHV2-26A0A0B4J1V2 119 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 IGHV1-69-2A0A0G2JMI3 117 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 A0A1B0GXF2 115 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 TMEM30CPA0ZSE6 113 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 OR5H14A6NHG9 310 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 IFITM5A6NNB3 132 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 A8MWP4 228 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 IQCF6A8MYZ5 107 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF736B4DX44 427 aaPredicted RBP1.12□□□□□ -2.23
LIMA1-209ENST00000552008 H3BMM0 161 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 M0R129 80 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 AIPO00170 330 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CDC42EP2O14613 210 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CDIPTO14735 213 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 RER1O15258 196 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 ORC5O43913 435 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 PDCD6O75340 191 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 LYZL6O75951 148 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CLPSP04118 112 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CRYBA1P05813 215 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 GYPBP06028 91 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 S100A6P06703 90 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 FABP1P07148 127 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 OR4A8P0C604 315 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 SLC25A16P16260 332 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CRYGSP22914 178 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CDK2P24941 298 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 TSPOP30536 169 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 BRS3P32247 399 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 HAAOP46952 286 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 GABRA2P47869 451 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 IDH3GP51553 393 aaPredicted RBP1.12□□□□□ -2.23
LIMA1-209ENST00000552008 EFNA4P52798 201 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 AP2S1P53680 142 aaPredicted RBP1.12□□□□□ -2.23
LIMA1-209ENST00000552008 RAB14P61106 215 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 EIF5AP63241 154 aaKnown RBP1.12□□□□□ -2.23
LIMA1-209ENST00000552008 SLC35A2P78381 396 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 S100A12P80511 92 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 PSG4Q00888 419 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 MEF2BQ02080 365 aaPredicted RBP1.12□□□□□ -2.23
LIMA1-209ENST00000552008 EMX1Q04741 257 aaPredicted RBP1.12□□□□□ -2.23
LIMA1-209ENST00000552008 PRDX4Q13162 271 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 CATR1Q13166 79 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 RAB31Q13636 194 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 SPCS2Q15005 226 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 SLC9A3R2Q15599 337 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 KISS1Q15726 138 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 GRK1Q15835 563 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 HIST3H3Q16695 136 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 ZNF181Q2M3W8 571 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 RGS21Q2M5E4 152 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 MPV17LQ2QL34 196 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 RNASE10Q5GAN6 216 aaKnown RBP1.12□□□□□ -2.23
LIMA1-209ENST00000552008 GLYATL3Q5SZD4 288 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 ELP2Q6IA86 826 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 LAIR2Q6ISS4 152 aa1.12□□□□□ -2.23
LIMA1-209ENST00000552008 SSX7Q7RTT5 188 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms