RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NFYAP23511 347 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-204ENST00000549064 FHITP49789 147 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 DAD1P61803 113 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 EIF4EBP1Q13541 118 aaPredicted RBP4.48□□□□□ -1.69
LIMA1-204ENST00000549064 OXA1LQ15070 435 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 P2RY14Q15391 338 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 KIAA1644Q3SXP7 199 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 LRRTM1Q86UE6 522 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 CBR4Q8N4T8 237 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 RHOXF1Q8NHV9 184 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 PRAC1Q96KF2 57 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 BET1LQ9NYM9 111 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 TAS2R8Q9NYW2 309 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 YTHDF2Q9Y5A9 579 aaKnown RBP4.48□□□□□ -1.69
LIMA1-204ENST00000549064 RFNGQ9Y644 331 aa4.48□□□□□ -1.69
LIMA1-204ENST00000549064 RNF213Q63HN8 5207 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 RNF222A6NCQ9 220 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 SMIM1B2RUZ4 78 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 UPK2O00526 184 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 CCSO14618 274 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 HRASP01112 189 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 CD5P06127 495 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 CDK1P06493 297 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 GNB3P16520 340 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 CD36P16671 472 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 CCL18P55774 89 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 ARL16Q0P5N6 197 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 PSMG4Q5JS54 123 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 RBM48Q5RL73 367 aaKnown RBP4.47□□□□□ -1.69
LIMA1-204ENST00000549064 TTC23Q5W5X9 447 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 STEAP1BQ6NZ63 245 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 ZNF773Q6PK81 442 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 TOMM20LQ6UXN7 152 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 GSG1LQ6UXU4 331 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 Q6ZRN7 208 aaPredicted RBP4.47□□□□□ -1.69
LIMA1-204ENST00000549064 SSX7Q7RTT5 188 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 ZNF485Q8NCK3 441 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 DCANP1Q8TF63 244 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 SLC25A46Q96AG3 418 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 Q96MT0 163 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 UHRF2Q96PU4 802 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 HINT2Q9BX68 163 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 COMMD5Q9GZQ3 224 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 NXF2Q9GZY0 626 aaKnown RBP4.47□□□□□ -1.69
LIMA1-204ENST00000549064 AP4S1Q9Y587 144 aa4.47□□□□□ -1.69
LIMA1-204ENST00000549064 F11RQ9Y624 299 aaKnown RBP4.47□□□□□ -1.69
LIMA1-204ENST00000549064 A0A075B6Q4 140 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 TEX50A0A1B0GTY4 177 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 TEX48A0A1B0GUV7 120 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 SMIM9A6NGZ8 99 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 K7EQM0 130 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 EI24O14681 340 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 CYB5BO43169 146 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 TNFSF12O43508 249 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 IGKV3-20P01619 116 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 DNAH10OSP0CZ25 163 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 TRAPPC2P0DI81 140 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 TRAPPC2BP0DI82 140 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 DCKP27707 260 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 FGF9P31371 208 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-204ENST00000549064 ID1P41134 155 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 CLDN12P56749 244 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 LINC01547P58512 204 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-204ENST00000549064 LINC00315P59091 139 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 DEFB1P60022 68 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 MRPS15P82914 257 aaKnown RBP4.46□□□□□ -1.7
LIMA1-204ENST00000549064 TTC32Q5I0X7 151 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 LINC00518Q8N0U6 118 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 OR5AP2Q8NGF4 316 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 OR10G8Q8NGN5 311 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 CENPNQ96H22 339 aaPredicted RBP4.46□□□□□ -1.7
LIMA1-204ENST00000549064 HSD17B10Q99714 261 aaKnown RBP4.46□□□□□ -1.7
LIMA1-204ENST00000549064 GINS3Q9BRX5 216 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 Q9H3A6 140 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 ZNF446Q9NWS9 450 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 ZNF586Q9NXT0 402 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 ORC6Q9Y5N6 252 aa4.46□□□□□ -1.7
LIMA1-204ENST00000549064 PUS1Q9Y606 427 aaKnown RBP eCLIP4.46□□□□□ -1.7
LIMA1-204ENST00000549064 A0A1B0GU03 582 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 F5H768 121 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 H3BMM0 161 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 I3L2K1 104 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 WBP4O75554 376 aaKnown RBP4.45□□□□□ -1.7
LIMA1-204ENST00000549064 IFNA5P01569 189 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 HLA-DQB1P01920 261 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 MYL12AP19105 171 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 P2RY1P47900 373 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 NUTF2P61970 127 aaKnown RBP4.45□□□□□ -1.7
LIMA1-204ENST00000549064 DHRS2Q13268 280 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 CLINT1Q14677 625 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 RCN1Q15293 331 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 USF2Q15853 346 aaPredicted RBP4.45□□□□□ -1.7
LIMA1-204ENST00000549064 FFAR4Q5NUL3 377 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 GDF5OSQ5U4N7 250 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 SPAG16Q8N0X2 631 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 OR4D10Q8NGI6 311 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 DNAH8Q96JB1 4490 aa4.45□□□□□ -1.7
LIMA1-204ENST00000549064 HELTA6NFD8 242 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 SULT1C2O00338 296 aa4.44□□□□□ -1.7
LIMA1-204ENST00000549064 MFNGO00587 321 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms