RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 HOXA1P49639 335 aaPredicted RBP3.24□□□□□ -1.89
LIMS1-214ENST00000542845 RORCP51449 518 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 ERVK-16P61578 105 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 PSG9Q00887 426 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 VWC2Q2TAL6 325 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 FAM78BQ5VT40 261 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 THOC7Q6I9Y2 204 aaKnown RBP3.24□□□□□ -1.89
LIMS1-214ENST00000542845 NFE4Q86UQ8 179 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 ZNF709Q8N972 641 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 OR1P1Q8NH06 330 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 OR51H1Q8NH63 302 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 RHOXF1Q8NHV9 184 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 RXFP4Q8TDU9 374 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 UPK3BQ9BT76 320 aa3.24□□□□□ -1.89
LIMS1-214ENST00000542845 FGF20Q9NP95 211 aaPredicted RBP3.24□□□□□ -1.89
LIMS1-214ENST00000542845 AK6Q9Y3D8 172 aaKnown RBP3.24□□□□□ -1.89
LIMS1-214ENST00000542845 MFNGO00587 321 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 EI24O14681 340 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 GYG2O15488 501 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 DIRAS3O95661 229 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 M6PRP20645 277 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 G6PCP35575 357 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 LPAR6P43657 344 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 NKX2-1P43699 371 aaPredicted RBP3.23□□□□□ -1.89
LIMS1-214ENST00000542845 PAX9P55771 341 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 FXYD4P59646 89 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 CATR1Q13166 79 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 EIF4EBP1Q13541 118 aaPredicted RBP3.23□□□□□ -1.89
LIMS1-214ENST00000542845 RAB11BQ15907 218 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 SSX1Q16384 188 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 TIGITQ495A1 244 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 KCTD21Q4G0X4 260 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 HSD17B12Q53GQ0 312 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 SPINK9Q5DT21 86 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 HES5Q5TA89 166 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 EBLN2Q6P2I7 272 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 WDR73Q6P4I2 378 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 SIGLEC15Q6ZMC9 328 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 NHLRC2Q8NBF2 726 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 BPIFB6Q8NFQ5 453 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 OR10R2Q8NGX6 335 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 COQ8AQ8NI60 647 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 FAM3DQ96BQ1 224 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 TMEM80Q96HE8 168 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 SAV1Q9H4B6 383 aaPredicted RBP3.23□□□□□ -1.89
LIMS1-214ENST00000542845 NRN1Q9NPD7 142 aa3.23□□□□□ -1.89
LIMS1-214ENST00000542845 NOP10Q9NPE3 64 aaKnown RBP3.23□□□□□ -1.89
LIMS1-214ENST00000542845 TRAV9-2A0A087WT02 112 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 A0A096LPF7 62 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 TMEM272A0A1B0GTI8 110 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 LOC100130705A0A1B0GUX0 176 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 hDV102S1A0JD36 115 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 GAGE12JA6NER3 117 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 ZNF701M0R085 212 aaPredicted RBP3.22□□□□□ -1.89
LIMS1-214ENST00000542845 M0R2Z0 102 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 SLC17A2O00624 439 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 NXPH4O95158 308 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 IGLV2-8P01709 118 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 ALPLP05186 524 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 FCER2P06734 321 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 CTXN2P0C2S0 81 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 PTHLHP12272 177 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 SNCAP37840 140 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 ID1P41134 155 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 ERHP84090 104 aaKnown RBP3.22□□□□□ -1.89
LIMS1-214ENST00000542845 SPINK13Q1W4C9 94 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 CDNFQ49AH0 187 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 AADACL3Q5VUY0 350 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 FOXI2Q6ZQN5 318 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 OR13F1Q8NGS4 319 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 LGALS14Q8TCE9 139 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 Q8WTZ3 238 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 APH1BQ8WW43 257 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 CENPNQ96H22 339 aaPredicted RBP3.22□□□□□ -1.89
LIMS1-214ENST00000542845 IGF2BP2-AS1Q96M15 143 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 LINC01587Q99440 93 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 FKBP11Q9NYL4 201 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 RAB22AQ9UL26 194 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 TIMM8BQ9Y5J9 83 aaPredicted RBP3.22□□□□□ -1.89
LIMS1-214ENST00000542845 FAT3Q8TDW7 4589 aa3.22□□□□□ -1.89
LIMS1-214ENST00000542845 TRAV12-2A0A075B6T6 113 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 IRGMA1A4Y4 181 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 SMIM30A4D0T7 59 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 RS1O15537 224 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 SCGB2A1O75556 95 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 GAGE7O76087 117 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 INSP01308 110 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 GAGE12FP0CL80 117 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 GAGE12GP0CL81 117 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 GAGE12IP0CL82 117 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 FCGR1AP12314 374 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 HIST1H1DP16402 221 aaKnown RBP3.21□□□□□ -1.9
LIMS1-214ENST00000542845 UCP1P25874 307 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 FCGR2CP31995 323 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 ARPC4P59998 168 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 ZNF79Q15937 498 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 POU2AF1Q16633 256 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 LINC01620Q4KN68 170 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 HACD4Q5VWC8 232 aa3.21□□□□□ -1.9
LIMS1-214ENST00000542845 ETFRF1Q6IPR1 90 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms