RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 GINS3Q9BRX5 216 aa11.79□□□□□ -0.52
RPAIN-206ENST00000539417 VSIRQ9H7M9 311 aa11.79□□□□□ -0.52
RPAIN-206ENST00000539417 C19orf73Q9NVV2 129 aa11.79□□□□□ -0.52
RPAIN-206ENST00000539417 IGKV3-7A0A075B6H7 116 aa11.78□□□□□ -0.52
RPAIN-206ENST00000539417 H0YIZ8 118 aa11.78□□□□□ -0.52
RPAIN-206ENST00000539417 SSNA1O43805 119 aa11.78□□□□□ -0.52
RPAIN-206ENST00000539417 IL4P05112 153 aa11.78□□□□□ -0.52
RPAIN-206ENST00000539417 IGHV4-30-4P0DP06 118 aa11.78□□□□□ -0.52
RPAIN-206ENST00000539417 GATA2P23769 480 aaPredicted RBP11.78□□□□□ -0.52
RPAIN-206ENST00000539417 CRYBB3P26998 211 aa11.78□□□□□ -0.52
RPAIN-206ENST00000539417 RBPMS2Q6ZRY4 209 aaKnown RBP11.78□□□□□ -0.52
RPAIN-206ENST00000539417 STPG3Q8N7X2 389 aa11.78□□□□□ -0.52
RPAIN-206ENST00000539417 U3KQE9 123 aa11.78□□□□□ -0.52
RPAIN-206ENST00000539417 IGSF23A1L1A6 192 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 L7N2F9 121 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 TSPAN4O14817 238 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 DFFBO76075 338 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 FRMD6-AS1P0C7T7 363 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 NPPCP23582 126 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 VAMP2P63027 116 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 LRRC37A5PQ49AS3 106 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 DEFB125Q8N687 156 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 TRGV9Q99603 122 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 B9D2Q9BPU9 175 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 OR5AC2Q9NZP5 309 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 MGAT4CQ9UBM8 478 aa11.77□□□□□ -0.52
RPAIN-206ENST00000539417 TRAV25A0A0B4J276 109 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 SMCO3A2RU48 225 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 CST7O76096 145 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 CXCL3P19876 107 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 TFPI2P48307 235 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 AKR1C1Q04828 323 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 TCF24Q7RTU0 167 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 AKAP14Q86UN6 197 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 GBGT1Q8N5D6 347 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 METTL26Q96S19 204 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 NMES1Q9C002 83 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 BOLA2-SMG1P6H3BVE0 249 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 SCGB2A1O75556 95 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 DEDDO75618 318 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 CAV2P51636 162 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 DLK1P80370 383 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 TMEM144Q7Z5S9 345 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 GTSCR1Q86UQ5 136 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 SBSPONQ8IVN8 264 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 OR10P1Q8NGE3 313 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 RNF125Q96EQ8 232 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 UBQLN2Q9UHD9 624 aa11.76□□□□□ -0.53
RPAIN-206ENST00000539417 P2RY1P47900 373 aa11.75□□□□□ -0.53
RPAIN-206ENST00000539417 LYZP61626 148 aa11.75□□□□□ -0.53
RPAIN-206ENST00000539417 TMEM252Q8N6L7 170 aa11.75□□□□□ -0.53
RPAIN-206ENST00000539417 CITED4Q96RK1 184 aa11.75□□□□□ -0.53
RPAIN-206ENST00000539417 SPAG8Q99932 426 aaPredicted RBP11.75□□□□□ -0.53
RPAIN-206ENST00000539417 PBDC1Q9BVG4 233 aa11.75□□□□□ -0.53
RPAIN-206ENST00000539417 LYRM2Q9NU23 88 aaPredicted RBP11.75□□□□□ -0.53
RPAIN-206ENST00000539417 OR11H12B2RN74 326 aa11.74□□□□□ -0.53
RPAIN-206ENST00000539417 FCN2Q15485 313 aa11.74□□□□□ -0.53
RPAIN-206ENST00000539417 ODF3L2Q3SX64 289 aa11.74□□□□□ -0.53
RPAIN-206ENST00000539417 LAMTOR1Q6IAA8 161 aa11.74□□□□□ -0.53
RPAIN-206ENST00000539417 WFDC3Q8IUB2 231 aa11.74□□□□□ -0.53
RPAIN-206ENST00000539417 FAM24BQ8N5W8 94 aa11.74□□□□□ -0.53
RPAIN-206ENST00000539417 TMEM217Q8N7C4 229 aa11.74□□□□□ -0.53
RPAIN-206ENST00000539417 OR11H7Q8NGC8 314 aa11.74□□□□□ -0.53
RPAIN-206ENST00000539417 PPP1R1CQ8WVI7 109 aa11.74□□□□□ -0.53
RPAIN-206ENST00000539417 RNF126Q9BV68 326 aa11.74□□□□□ -0.53
RPAIN-206ENST00000539417 RBMY1BA6NDE4 496 aaKnown RBP11.73□□□□□ -0.53
RPAIN-206ENST00000539417 RBMY1EA6NEQ0 496 aaKnown RBP11.73□□□□□ -0.53
RPAIN-206ENST00000539417 RBMY1DP0C7P1 496 aaKnown RBP11.73□□□□□ -0.53
RPAIN-206ENST00000539417 SLC38A11Q08AI6 406 aa11.73□□□□□ -0.53
RPAIN-206ENST00000539417 ZNF124Q15973 351 aa11.73□□□□□ -0.53
RPAIN-206ENST00000539417 C16orf54Q6UWD8 224 aa11.73□□□□□ -0.53
RPAIN-206ENST00000539417 GLMPQ8WWB7 406 aa11.73□□□□□ -0.53
RPAIN-206ENST00000539417 RABAC1Q9UI14 185 aa11.73□□□□□ -0.53
RPAIN-206ENST00000539417 A8MZ25 164 aa11.72□□□□□ -0.53
RPAIN-206ENST00000539417 BUB3O43684 328 aa11.72□□□□□ -0.53
RPAIN-206ENST00000539417 PVALBP20472 110 aaPredicted RBP11.72□□□□□ -0.53
RPAIN-206ENST00000539417 NHLH2Q02577 135 aa11.72□□□□□ -0.53
RPAIN-206ENST00000539417 CYP2G1PQ6ZSU1 146 aa11.72□□□□□ -0.53
RPAIN-206ENST00000539417 MS4A6AQ9H2W1 248 aa11.72□□□□□ -0.53
RPAIN-206ENST00000539417 SRD5A3Q9H8P0 318 aa11.72□□□□□ -0.53
RPAIN-206ENST00000539417 EIF2B2P49770 351 aaKnown RBP11.71□□□□□ -0.53
RPAIN-206ENST00000539417 SULT1A1P50225 295 aa11.71□□□□□ -0.53
RPAIN-206ENST00000539417 RPL11P62913 178 aaKnown RBP11.71□□□□□ -0.53
RPAIN-206ENST00000539417 LINC00322Q6ZN03 302 aaPredicted RBP11.71□□□□□ -0.53
RPAIN-206ENST00000539417 NPVFQ9HCQ7 196 aa11.71□□□□□ -0.53
RPAIN-206ENST00000539417 A0A1W2PS18 150 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 FNDC10F2Z333 226 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 MPC2O95563 127 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 APRG1Q8IVJ8 170 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 MGST2Q99735 147 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 TUBA4BQ9H853 241 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 DOK5Q9P104 306 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 OR4C46A6NHA9 309 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 ORM2P19652 201 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 CYCSP99999 105 aaKnown RBP11.7□□□□□ -0.54
RPAIN-206ENST00000539417 EWSR1Q01844 656 aaKnown RBP eCLIP11.7□□□□□ -0.54
RPAIN-206ENST00000539417 TEPPQ6URK8 271 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 BPIFCQ8NFQ6 507 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 STXBP6Q8NFX7 210 aa11.7□□□□□ -0.54
RPAIN-206ENST00000539417 GGACTQ9BVM4 153 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms