RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 JPT2Q9H910 190 aa14.95□□□□□ -0.02
SFSWAP-203ENST00000535236 ACTL10Q5JWF8 245 aa14.95□□□□□ -0.02
SFSWAP-203ENST00000535236 TEX38Q6PEX7 206 aa14.95□□□□□ -0.02
SFSWAP-203ENST00000535236 KLHL30-AS1Q8NEE0 82 aa14.95□□□□□ -0.02
SFSWAP-203ENST00000535236 GGTLC3B5MD39 225 aa14.95□□□□□ -0.02
SFSWAP-203ENST00000535236 EFNA2O43921 213 aa14.95□□□□□ -0.02
SFSWAP-203ENST00000535236 SLC25A16P16260 332 aa14.95□□□□□ -0.02
SFSWAP-203ENST00000535236 TREML4Q6UXN2 200 aa14.95□□□□□ -0.02
SFSWAP-203ENST00000535236 PTPRFP10586 1907 aa14.94□□□□□ -0.02
SFSWAP-203ENST00000535236 IGKV1D-8A0A087WSZ0 117 aa14.94□□□□□ -0.02
SFSWAP-203ENST00000535236 SLC25A39Q9BZJ4 359 aaPredicted RBP14.94□□□□□ -0.02
SFSWAP-203ENST00000535236 CD177Q8N6Q3 437 aa14.94□□□□□ -0.02
SFSWAP-203ENST00000535236 NABP1Q96AH0 204 aa14.94□□□□□ -0.02
SFSWAP-203ENST00000535236 HOXA3O43365 443 aaPredicted RBP14.94□□□□□ -0.02
SFSWAP-203ENST00000535236 LCNL1Q6ZST4 164 aa14.94□□□□□ -0.02
SFSWAP-203ENST00000535236 CD300EQ496F6 205 aaPredicted RBP14.94□□□□□ -0.02
SFSWAP-203ENST00000535236 RNF166Q96A37 237 aaPredicted RBP14.94□□□□□ -0.02
SFSWAP-203ENST00000535236 SCRT1Q9BWW7 348 aa14.94□□□□□ -0.02
SFSWAP-203ENST00000535236 ZNF876PQ49A33 203 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 NR2C2APQ86WQ0 139 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 LINC01356Q8N9X3 169 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 IGHV3-53P01767 116 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 RIPPLY3P57055 190 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 SLC25A48Q6ZT89 311 aaKnown RBP14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 C3orf56Q8N813 242 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 TMEM190Q8WZ59 177 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 RNF114Q9Y508 228 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 A8MXK9 166 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 LAGE3Q14657 143 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 ZNF362Q5T0B9 420 aaPredicted RBP14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 C9orf139Q6ZV77 190 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 SRRM4A7MD48 611 aaKnown RBP14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 FXYD7P58549 80 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 C5orf64Q2M2E5 130 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 SLC25A2Q9BXI2 301 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 GNB1LQ9BYB4 327 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 SCN8AQ9UQD0 1980 aa14.93□□□□□ -0.02
SFSWAP-203ENST00000535236 ATP5L2Q7Z4Y8 100 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 C1QTNF4Q9BXJ3 329 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 NDPQ00604 133 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 Q0VFX4 171 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 CHCHD1Q96BP2 118 aaKnown RBP14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 CDK2AP2O75956 126 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 C1QL4Q86Z23 238 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 USMG5Q96IX5 58 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 ABCA7Q8IZY2 2146 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 CACNA1IQ9P0X4 2223 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 EXOC3-AS1Q8N2X6 119 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 MPZP25189 248 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 IFI27L1Q96BM0 104 aa14.92□□□□□ -0.02
SFSWAP-203ENST00000535236 FCN3O75636 299 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 VSIRQ9H7M9 311 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 PLXNA1Q9UIW2 1896 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 PSPNO60542 156 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 ZNF138P52744 262 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 WFDC1Q9HC57 220 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 GGTLC1Q9BX51 225 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 CRIM1Q9NZV1 1036 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 BUB1B-PAK6H3BSN5 160 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 GZMBP10144 247 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 FOXL1Q12952 345 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 TRGV9Q99603 122 aa14.91□□□□□ -0.02
SFSWAP-203ENST00000535236 M0R2P5 195 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 INSP01308 110 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 LY6G6FQ5SQ64 297 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 MDS2Q8NDY4 140 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 BTCP35070 178 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 GAFA1Q96PS6 74 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 PATJQ8NI35 1801 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 TRAV9-2A0A087WT02 112 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 SRSF6Q13247 344 aaKnown RBP14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 KLF17Q5JT82 389 aaPredicted RBP14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 ZNF329Q86UD4 541 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 LAMTOR2Q9Y2Q5 125 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 MBD3L4A6NDZ8 208 aaPredicted RBP14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 MBD3L3A6NE82 208 aaPredicted RBP14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 MBD3L5A6NJ08 208 aaPredicted RBP14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 FAM223BA6NKX1 122 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 LINC00587B1AMM8 73 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 H0YIZ8 118 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 H0YJW9 148 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 FAM223AQ8IWN6 122 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 MBD3L2Q8NHZ7 208 aaPredicted RBP14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 MBD3L1Q8WWY6 194 aa14.9□□□□□ -0.02
SFSWAP-203ENST00000535236 UBE2E2Q96LR5 201 aa14.89□□□□□ -0.03
SFSWAP-203ENST00000535236 A0A1B0GV72 72 aa14.89□□□□□ -0.03
SFSWAP-203ENST00000535236 PAX4O43316 350 aa14.89□□□□□ -0.03
SFSWAP-203ENST00000535236 SPATA31B1PQ5VZV4 182 aa14.89□□□□□ -0.03
SFSWAP-203ENST00000535236 LINC00477Q96M19 166 aa14.89□□□□□ -0.03
SFSWAP-203ENST00000535236 J3QRE1 110 aa14.89□□□□□ -0.03
SFSWAP-203ENST00000535236 IGKV1-27A0A075B6S5 117 aa14.89□□□□□ -0.03
SFSWAP-203ENST00000535236 CLDN16Q9Y5I7 305 aa14.89□□□□□ -0.03
SFSWAP-203ENST00000535236 BRCA1P38398 1863 aaKnown RBP14.89□□□□□ -0.03
SFSWAP-203ENST00000535236 ESPL1Q14674 2120 aa14.89□□□□□ -0.03
SFSWAP-203ENST00000535236 MST1P26927 711 aa14.88□□□□□ -0.03
SFSWAP-203ENST00000535236 DERL1Q9BUN8 251 aa14.88□□□□□ -0.03
SFSWAP-203ENST00000535236 SMPXQ9UHP9 88 aa14.88□□□□□ -0.03
SFSWAP-203ENST00000535236 DOCK3Q8IZD9 2030 aa14.88□□□□□ -0.03
SFSWAP-203ENST00000535236 F8VVB4 439 aa14.88□□□□□ -0.03
SFSWAP-203ENST00000535236 F8VWA3 439 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms