RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 ZNF581Q9P0T4 197 aa12.18□□□□□ -0.46
PCDHA9-202ENST00000532602 SOD3P08294 240 aa12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 SPTAN1Q13813 2472 aaKnown RBP12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 DPRXA6NFQ7 191 aa12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 TEX38Q6PEX7 206 aa12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 UBE2DNLQ8IWF7 75 aa12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 WDR83OSQ9Y284 106 aa12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 GPR179Q6PRD1 2367 aa12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 MBNL3Q9NUK0 354 aaKnown RBP12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 PI4KAP42356 2102 aa12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 PSPNO60542 156 aa12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 MPZP25189 248 aa12.17□□□□□ -0.46
PCDHA9-202ENST00000532602 LINC01549A6NIU2 74 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 HIGD1CA8MV81 97 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 FBLN7Q53RD9 439 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 GATA3P23771 443 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 EFNB1P98172 346 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 FER1L5A0AVI2 2057 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 TMEM155Q4W5P6 130 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 USMG5Q96IX5 58 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 FREM3P0C091 2139 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 MED12Q93074 2177 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 KIF26BQ2KJY2 2108 aa12.16□□□□□ -0.46
PCDHA9-202ENST00000532602 ABCA1O95477 2261 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 TRBV7-9A0A0J9YWB2 115 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 RNF166Q96A37 237 aaPredicted RBP12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 C1QTNF4Q9BXJ3 329 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 PLA2G2CQ5R387 149 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 C10orf55Q5SWW7 151 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 PRADC1Q9BSG0 188 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 F2Z2F3 143 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 C3orf56Q8N813 242 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 C5orf64Q2M2E5 130 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 DTX1Q86Y01 620 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 CHCHD5Q9BSY4 110 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 CYSLTR1Q9Y271 337 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 WISP1O95388 367 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 SMIM13P0DJ93 91 aa12.15□□□□□ -0.46
PCDHA9-202ENST00000532602 KIF26AQ9ULI4 1882 aaPredicted RBP12.15□□□□□ -0.47
PCDHA9-202ENST00000532602 TRBV7-1A0A0A6YYK4 115 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 A0A1B0GWJ7 208 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 LINC00205P59089 165 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 NXT2Q9NPJ8 142 aaKnown RBP12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 E7EQL1 145 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 SLC25A20O43772 301 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 SLC25A48Q6ZT89 311 aaKnown RBP12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 OR9G4Q8NGQ1 327 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 BPESC1Q9GZL8 116 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 RNF222A6NCQ9 220 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 DEFB121Q5J5C9 76 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 OSTCQ9NRP0 149 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 CARHSP1Q9Y2V2 147 aaKnown RBP12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 A0A087WX48 190 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 CD33P20138 364 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 ERVK11-1P61568 191 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 ORMDL2Q53FV1 153 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 C9orf139Q6ZV77 190 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 A0A087WWC5 75 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 ERVH48-1M5A8F1 160 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 PYYP10082 97 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 BTCP35070 178 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 NUDT11Q96G61 164 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 NBASA2RRP1 2371 aa12.14□□□□□ -0.47
PCDHA9-202ENST00000532602 GAFA1Q96PS6 74 aa12.13□□□□□ -0.47
PCDHA9-202ENST00000532602 TCF21O43680 179 aa12.13□□□□□ -0.47
PCDHA9-202ENST00000532602 SRSF1Q07955 248 aaKnown RBP eCLIP12.13□□□□□ -0.47
PCDHA9-202ENST00000532602 Q71RC1 249 aaPredicted RBP12.13□□□□□ -0.47
PCDHA9-202ENST00000532602 EFNB3Q15768 340 aa12.13□□□□□ -0.47
PCDHA9-202ENST00000532602 ATOH7Q8N100 152 aa12.13□□□□□ -0.47
PCDHA9-202ENST00000532602 RNF223E7ERA6 249 aa12.13□□□□□ -0.47
PCDHA9-202ENST00000532602 MRPL16Q9NX20 251 aaKnown RBP12.13□□□□□ -0.47
PCDHA9-202ENST00000532602 ROS1P08922 2347 aa12.13□□□□□ -0.47
PCDHA9-202ENST00000532602 POLEQ07864 2286 aa12.13□□□□□ -0.47
PCDHA9-202ENST00000532602 LOC102724200A0A096LPH7 203 aaPredicted RBP12.12□□□□□ -0.47
PCDHA9-202ENST00000532602 SEPSECSQ9HD40 501 aaKnown RBP12.12□□□□□ -0.47
PCDHA9-202ENST00000532602 PIP4P2Q8N4L2 257 aa12.12□□□□□ -0.47
PCDHA9-202ENST00000532602 IFITM2Q01629 132 aa12.12□□□□□ -0.47
PCDHA9-202ENST00000532602 RUSC1-AS1Q66K80 236 aa12.12□□□□□ -0.47
PCDHA9-202ENST00000532602 NOTCH4Q99466 2003 aa12.12□□□□□ -0.47
PCDHA9-202ENST00000532602 HGFACQ04756 655 aa12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 ZNF415Q09FC8 603 aa12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 BUB1B-PAK6H3BSN5 160 aa12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 TRAV3A0A0B4J244 114 aa12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 FAM223BA6NKX1 122 aa12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 DDTP30046 118 aa12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 RPL23P62829 140 aaKnown RBP12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 FAM223AQ8IWN6 122 aa12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 DIDO1Q9BTC0 2240 aaKnown RBP12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 PRTN3P24158 256 aa12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 KLHL30-AS1Q8NEE0 82 aa12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 ZNRD1Q9P1U0 126 aa12.11□□□□□ -0.47
PCDHA9-202ENST00000532602 PLXND1Q9Y4D7 1925 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 PHF3Q92576 2039 aaKnown RBP12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 J3QKU1 62 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 IMMP2LQ96T52 175 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 TRGV9Q99603 122 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 ADARB2-AS1A8MUL3 147 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 PLXNA2O75051 1894 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 CACNA1HO95180 2353 aa12.1□□□□□ -0.47
PCDHA9-202ENST00000532602 IGKV1D-17A0A075B6S4 117 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms