RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 PRORYQ9H606 182 aa3.46□□□□□ -1.85
VCAN-209ENST00000513016 GREB1LQ9C091 1923 aaPredicted RBP3.46□□□□□ -1.85
VCAN-209ENST00000513016 OVOL3O00110 214 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 NDUFA4O00483 81 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 LY6HO94772 140 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 TFF3Q07654 80 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 TMEM249Q2WGJ8 235 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 S100A7L2Q5SY68 101 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 C9orf62Q8N4C0 152 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 CROCCQ5TZA2 2017 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 FNDC10F2Z333 226 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 PRB1P04280 392 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 CCL20P78556 96 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 RCC1LQ96I51 464 aaKnown RBP3.46□□□□□ -1.86
VCAN-209ENST00000513016 IGKV1D-17A0A075B6S4 117 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 IZUMO1RA6ND01 250 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 IGLV1-44P01699 117 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 DMRTA1Q5VZB9 504 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 RASL11AQ6T310 242 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 RNF182Q8N6D2 247 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 SRRM4A7MD48 611 aaKnown RBP3.46□□□□□ -1.86
VCAN-209ENST00000513016 CA1P00915 261 aaPredicted RBP3.46□□□□□ -1.86
VCAN-209ENST00000513016 DEFB130BP0DP73 79 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 DEFB130AP0DP74 79 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 SNRPEP62304 92 aaKnown RBP3.46□□□□□ -1.86
VCAN-209ENST00000513016 C1orf194Q5T5A4 169 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 SLC25A39Q9BZJ4 359 aaPredicted RBP3.46□□□□□ -1.86
VCAN-209ENST00000513016 RBM38Q9H0Z9 239 aaKnown RBP3.46□□□□□ -1.86
VCAN-209ENST00000513016 TMEM160Q9NX00 188 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 ELF5Q9UKW6 265 aaPredicted RBP3.46□□□□□ -1.86
VCAN-209ENST00000513016 PSME4Q14997 1843 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 ZNF98A6NK75 572 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 TEX36Q5VZQ5 186 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 TTC9CQ8N5M4 171 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 MESP1Q9BRJ9 268 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 IGHV2-5P01817 119 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 ERCC8Q13216 396 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 DOCK3Q8IZD9 2030 aa3.46□□□□□ -1.86
VCAN-209ENST00000513016 BRWD1Q9NSI6 2320 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 TRAV12-3A0A0B4J271 114 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 IGKV1D-13A0A0B4J2D9 117 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 IGKV1-13P0DP09 117 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 RPL24P83731 157 aaKnown RBP3.45□□□□□ -1.86
VCAN-209ENST00000513016 TCTEX1D4Q5JR98 221 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 Q6P435 159 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 RTBDNQ9BSG5 229 aaPredicted RBP3.45□□□□□ -1.86
VCAN-209ENST00000513016 KAAG1Q9UBP8 84 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 FAM215AQ9Y5M1 114 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 VCYO14598 125 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 ATP6V0E1O15342 81 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 TFF1P04155 84 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 MYCNOSP40205 109 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 MAP1BP46821 2468 aaKnown RBP3.45□□□□□ -1.86
VCAN-209ENST00000513016 ZNF876PQ49A33 203 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 HSPB9Q9BQS6 159 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 JPT2Q9H910 190 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 IGLV3-9A0A075B6K5 115 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 ETV2O00321 342 aaPredicted RBP3.45□□□□□ -1.86
VCAN-209ENST00000513016 APOHP02749 345 aaPredicted RBP3.45□□□□□ -1.86
VCAN-209ENST00000513016 CGB7P0DN87 165 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 GATA2P23769 480 aaPredicted RBP3.45□□□□□ -1.86
VCAN-209ENST00000513016 YPEL3P61236 119 aaPredicted RBP3.45□□□□□ -1.86
VCAN-209ENST00000513016 DEFB112Q30KQ8 113 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 Q8NFD4 153 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 OSTCQ9NRP0 149 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 MIA3Q5JRA6 1907 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 CCL24O00175 119 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 LINC00158P58513 81 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 SLC25A34Q6PIV7 304 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 IL17RELQ6ZVW7 336 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 SBF1O95248 1867 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 ZNF561-AS1K7EIQ3 104 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 CXCL2P19875 107 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 ZNF319Q9P2F9 582 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 IGKV1-12A0A0C4DH73 117 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 IGKV1D-12P01611 117 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 IGHV3-53P01767 116 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 FABP2P12104 132 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 ID3Q02535 119 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 Q6ZS49 121 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 FOXC2Q99958 501 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 SPXQ9BT56 116 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 CST9LQ9H4G1 147 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 EVI2AP22794 236 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 FOXE3Q13461 319 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 C6orf226Q5I0X4 101 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 SH2D6Q7Z4S9 175 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 MRAPQ8TCY5 172 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 C10orf105Q8TEF2 133 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 ISOC2Q96AB3 205 aa3.45□□□□□ -1.86
VCAN-209ENST00000513016 TDRD6O60522 2096 aaKnown RBP3.44□□□□□ -1.86
VCAN-209ENST00000513016 SCO2A0A1W2PP80 73 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 NAPSAO96009 420 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 RPLP1P05386 114 aaKnown RBP3.44□□□□□ -1.86
VCAN-209ENST00000513016 OTX1P32242 354 aaPredicted RBP3.44□□□□□ -1.86
VCAN-209ENST00000513016 RPL15P61313 204 aaKnown RBP3.44□□□□□ -1.86
VCAN-209ENST00000513016 PDE6HQ13956 83 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 C10orf55Q5SWW7 151 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 RPRMLQ8N4K4 120 aa3.44□□□□□ -1.86
VCAN-209ENST00000513016 PLEKHB2Q96CS7 222 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms