RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 TCEAL7Q9BRU2 100 aa4.37□□□□□ -1.71
ATG4A-208ENST00000489247 SLC25A33Q9BSK2 321 aa4.37□□□□□ -1.71
ATG4A-208ENST00000489247 CTDSP1Q9GZU7 261 aa4.37□□□□□ -1.71
ATG4A-208ENST00000489247 FBXL15Q9H469 300 aa4.37□□□□□ -1.71
ATG4A-208ENST00000489247 SEPSECSQ9HD40 501 aaKnown RBP4.37□□□□□ -1.71
ATG4A-208ENST00000489247 TECRQ9NZ01 308 aaKnown RBP4.37□□□□□ -1.71
ATG4A-208ENST00000489247 MRPL36Q9P0J6 103 aaKnown RBP4.37□□□□□ -1.71
ATG4A-208ENST00000489247 NAT8Q9UHE5 227 aa4.37□□□□□ -1.71
ATG4A-208ENST00000489247 LY96Q9Y6Y9 160 aa4.37□□□□□ -1.71
ATG4A-208ENST00000489247 HRNRQ86YZ3 2850 aaPredicted RBP4.37□□□□□ -1.71
ATG4A-208ENST00000489247 IGLV11-55A0A075B6I3 123 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 A0A096LNT2 108 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 IGHV4-61A0A0C4DH41 118 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 CENPVL3A0A0U1RRI6 287 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 A0A1W2PRE2 83 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 C9JCJ5 164 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 C11orf94C9JXX5 98 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 K7EIM0 57 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 M0R036 132 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 NPFFO15130 113 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 NUPL2O15504 423 aaKnown RBP4.36□□□□□ -1.71
ATG4A-208ENST00000489247 PAGE4O60829 102 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 BRI3O95415 125 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 IGLC1P0CG04 106 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 FAM106CPP0CH98 169 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 C8orf88P0DMB2 117 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 CD99P14209 185 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 SLC25A16P16260 332 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 NPPCP23582 126 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 CRIP2P52943 208 aaPredicted RBP4.36□□□□□ -1.71
ATG4A-208ENST00000489247 BPIFB3P59826 476 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 SUMO2P61956 95 aaKnown RBP4.36□□□□□ -1.71
ATG4A-208ENST00000489247 LCN2P80188 198 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 FLI1Q01543 452 aaPredicted RBP4.36□□□□□ -1.71
ATG4A-208ENST00000489247 PRB3Q04118 309 aaPredicted RBP4.36□□□□□ -1.71
ATG4A-208ENST00000489247 TMEM241Q24JQ0 296 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 KRTAP15-1Q3LI76 137 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 ASPHD1Q5U4P2 390 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 SPATA31B1PQ5VZV4 182 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 MIR17HGQ75NE6 70 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 Q8N9W7 124 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 STXBP6Q8NFX7 210 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 C22orf15Q8WYQ4 148 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 NPIPB3Q92617 1050 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 TMEM68Q96MH6 324 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 PYGO2Q9BRQ0 406 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 PARLQ9H300 379 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 DNAJC4Q9NNZ3 241 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 RPS10P5Q9NQ39 176 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 C1RLQ9NZP8 487 aa4.36□□□□□ -1.71
ATG4A-208ENST00000489247 PUS1Q9Y606 427 aaKnown RBP eCLIP4.36□□□□□ -1.71
ATG4A-208ENST00000489247 USP9XQ93008 2570 aaPredicted RBP4.36□□□□□ -1.71
ATG4A-208ENST00000489247 TRBV24-1A0A075B6N3 115 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 IGHV7-81A0A0B4J1V7 117 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 IGHV1-69DA0A0B4J2H0 117 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 A0A1W2PRD5 423 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 A0A1W2PRF3 423 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 A0A1W2PRM7 423 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 ZNF727A8MUV8 499 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 HMGB3O15347 200 aaKnown RBP4.35□□□□□ -1.71
ATG4A-208ENST00000489247 TGOLN2O43493 480 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 EIF3GO75821 320 aaKnown RBP eCLIP4.35□□□□□ -1.71
ATG4A-208ENST00000489247 IGHV1-69P01742 117 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 DEFA4P12838 97 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 BRS3P32247 399 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 SAA4P35542 130 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 MYCNOSP40205 109 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 ATP5J2P56134 94 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 FAM3BP58499 235 aaPredicted RBP4.35□□□□□ -1.71
ATG4A-208ENST00000489247 RPL23P62829 140 aaKnown RBP4.35□□□□□ -1.71
ATG4A-208ENST00000489247 GNB1P62873 340 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 CX3CL1P78423 397 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 NDPQ00604 133 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 FXYD3Q14802 87 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 FAM78BQ5VT40 261 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 ZNF343Q6P1L6 599 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 PATE2Q6UY27 113 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 LRRC75A-AS1Q8N1F1 130 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 OR4F5Q8NH21 305 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 C17orf50Q8WW18 174 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 ARPC1AQ92747 370 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 RPUSD4Q96CM3 377 aaKnown RBP4.35□□□□□ -1.71
ATG4A-208ENST00000489247 ACY3Q96HD9 319 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 OR4F4Q96R69 305 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 ATP6V0BQ99437 205 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 SMIM7Q9BQ49 75 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 SLC25A2Q9BXI2 301 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 TNFRSF19Q9NS68 423 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 SERTAD4Q9NUC0 356 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 TMEM14CQ9P0S9 112 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 ZNF580Q9UK33 172 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 YTHDF2Q9Y5A9 579 aaKnown RBP4.35□□□□□ -1.71
ATG4A-208ENST00000489247 HILPDAQ9Y5L2 63 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 TNCP24821 2201 aa4.35□□□□□ -1.71
ATG4A-208ENST00000489247 ZNF462Q96JM2 2506 aa4.34□□□□□ -1.71
ATG4A-208ENST00000489247 IGHV4-30-2A0A087WSY4 118 aa4.34□□□□□ -1.71
ATG4A-208ENST00000489247 TRAV30A0A087WSZ9 112 aa4.34□□□□□ -1.71
ATG4A-208ENST00000489247 CLDN34H7C241 214 aa4.34□□□□□ -1.71
ATG4A-208ENST00000489247 J3QLI3 93 aa4.34□□□□□ -1.71
ATG4A-208ENST00000489247 COX7A2P2O60397 106 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms