RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 NPIPB3Q92617 1050 aa10.74□□□□□ -0.69
MCF2L-228ENST00000487354 ZNF486Q96H40 463 aaPredicted RBP10.74□□□□□ -0.69
MCF2L-228ENST00000487354 ENY2Q9NPA8 101 aa10.74□□□□□ -0.69
MCF2L-228ENST00000487354 LINC00588Q9Y4M8 146 aa10.74□□□□□ -0.69
MCF2L-228ENST00000487354 PLAC8L1A1L4L8 177 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 GSTZ1O43708 216 aaPredicted RBP10.73□□□□□ -0.69
MCF2L-228ENST00000487354 PGAM2P15259 253 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 ALDH3B2P48448 385 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 PSMB3P49720 205 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 PSG9Q00887 426 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 FAM78BQ5VT40 261 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 OR4B1Q8NGF8 309 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 C20orf173Q96LM9 149 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 C17orf77Q96MU5 243 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 LINC00052Q96N35 136 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 VCX3BQ9H321 246 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 SCPEP1Q9HB40 452 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 GOLT1BQ9Y3E0 138 aa10.73□□□□□ -0.69
MCF2L-228ENST00000487354 A0A0J9YX75 114 aa10.72□□□□□ -0.69
MCF2L-228ENST00000487354 RD3LP0DJH9 198 aa10.72□□□□□ -0.69
MCF2L-228ENST00000487354 RRN3P1Q2M238 152 aa10.72□□□□□ -0.69
MCF2L-228ENST00000487354 SNX29P2Q8IUI4 249 aa10.72□□□□□ -0.69
MCF2L-228ENST00000487354 CROCCP3Q8IVE0 287 aa10.72□□□□□ -0.69
MCF2L-228ENST00000487354 SLC24A4Q8NFF2 622 aa10.72□□□□□ -0.69
MCF2L-228ENST00000487354 RNF125Q96EQ8 232 aa10.72□□□□□ -0.69
MCF2L-228ENST00000487354 ATG101Q9BSB4 218 aa10.72□□□□□ -0.69
MCF2L-228ENST00000487354 KLK11Q9UBX7 282 aa10.72□□□□□ -0.69
MCF2L-228ENST00000487354 IGKV1D-37A0A075B6S9 117 aa10.71□□□□□ -0.69
MCF2L-228ENST00000487354 NEDD8Q15843 81 aa10.71□□□□□ -0.69
MCF2L-228ENST00000487354 TRIM16LQ309B1 348 aa10.71□□□□□ -0.69
MCF2L-228ENST00000487354 ACY3Q96HD9 319 aa10.71□□□□□ -0.69
MCF2L-228ENST00000487354 CRXO43186 299 aaPredicted RBP10.7□□□□□ -0.7
MCF2L-228ENST00000487354 ATG12O94817 140 aa10.7□□□□□ -0.7
MCF2L-228ENST00000487354 NMSQ5H8A3 153 aa10.7□□□□□ -0.7
MCF2L-228ENST00000487354 OR4D10Q8NGI6 311 aa10.7□□□□□ -0.7
MCF2L-228ENST00000487354 RRNAD1Q96FB5 475 aaKnown RBP10.7□□□□□ -0.7
MCF2L-228ENST00000487354 C7orf50Q9BRJ6 194 aaKnown RBP10.7□□□□□ -0.7
MCF2L-228ENST00000487354 HEYLQ9NQ87 328 aaPredicted RBP10.7□□□□□ -0.7
MCF2L-228ENST00000487354 CDS2O95674 445 aa10.69□□□□□ -0.7
MCF2L-228ENST00000487354 SPATA31B1PQ5VZV4 182 aa10.69□□□□□ -0.7
MCF2L-228ENST00000487354 OR8G2PQ6IF36 304 aa10.69□□□□□ -0.7
MCF2L-228ENST00000487354 OR13C8Q8NGS7 320 aa10.69□□□□□ -0.7
MCF2L-228ENST00000487354 IGF2BP2-AS1Q96M15 143 aa10.69□□□□□ -0.7
MCF2L-228ENST00000487354 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.69□□□□□ -0.7
MCF2L-228ENST00000487354 CACNG5Q9UF02 275 aa10.69□□□□□ -0.7
MCF2L-228ENST00000487354 LYRM9A8MSI8 78 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 ZNF705GA8MUZ8 300 aaPredicted RBP10.68□□□□□ -0.7
MCF2L-228ENST00000487354 ISLRO14498 428 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 NUDT3O95989 172 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 APOA1P02647 267 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 CD3DP04234 171 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 OR5AC1P0C628 307 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 ID1P41134 155 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 SUPT4H1P63272 117 aaKnown RBP10.68□□□□□ -0.7
MCF2L-228ENST00000487354 ZNF90Q03938 601 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 MEF2DQ14814 521 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 FAM219AQ8IW50 185 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 ARRDC1Q8N5I2 433 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 COQ8AQ8NI60 647 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 GLYATL2Q8WU03 294 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 RNF141Q8WVD5 230 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 PBDC1Q9BVG4 233 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 TMEM222Q9H0R3 208 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 MAGT1Q9H0U3 335 aa10.68□□□□□ -0.7
MCF2L-228ENST00000487354 NUP62P37198 522 aaPredicted RBP10.67□□□□□ -0.7
MCF2L-228ENST00000487354 LSM3P62310 102 aaKnown RBP10.67□□□□□ -0.7
MCF2L-228ENST00000487354 FCN2Q15485 313 aa10.67□□□□□ -0.7
MCF2L-228ENST00000487354 RNASE12Q5GAN4 147 aaKnown RBP10.67□□□□□ -0.7
MCF2L-228ENST00000487354 ETFRF1Q6IPR1 90 aa10.67□□□□□ -0.7
MCF2L-228ENST00000487354 SELENOHQ8IZQ5 122 aaKnown RBP10.67□□□□□ -0.7
MCF2L-228ENST00000487354 RNASE11Q8TAA1 199 aaKnown RBP10.67□□□□□ -0.7
MCF2L-228ENST00000487354 YIPF6Q96EC8 236 aa10.67□□□□□ -0.7
MCF2L-228ENST00000487354 DOK5Q9P104 306 aa10.67□□□□□ -0.7
MCF2L-228ENST00000487354 COPZ2Q9P299 210 aa10.67□□□□□ -0.7
MCF2L-228ENST00000487354 COMMD3Q9UBI1 195 aa10.67□□□□□ -0.7
MCF2L-228ENST00000487354 F5H768 121 aa10.66□□□□□ -0.7
MCF2L-228ENST00000487354 DEFB130BP0DP73 79 aa10.66□□□□□ -0.7
MCF2L-228ENST00000487354 DEFB130AP0DP74 79 aa10.66□□□□□ -0.7
MCF2L-228ENST00000487354 AZU1P20160 251 aa10.66□□□□□ -0.7
MCF2L-228ENST00000487354 BTF3P20290 206 aaKnown RBP10.66□□□□□ -0.7
MCF2L-228ENST00000487354 RNASE10Q5GAN6 216 aaKnown RBP10.66□□□□□ -0.7
MCF2L-228ENST00000487354 C1orf194Q5T5A4 169 aa10.66□□□□□ -0.7
MCF2L-228ENST00000487354 EBLN2Q6P2I7 272 aa10.66□□□□□ -0.7
MCF2L-228ENST00000487354 SSX7Q7RTT5 188 aa10.66□□□□□ -0.7
MCF2L-228ENST00000487354 MARCH1Q8TCQ1 289 aa10.66□□□□□ -0.7
MCF2L-228ENST00000487354 FLG2Q5D862 2391 aaPredicted RBP10.65□□□□□ -0.7
MCF2L-228ENST00000487354 CEBPZOSA8MTT3 80 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 EPM2AB3EWF7 344 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 M0R2Z0 102 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 HPGDSO60760 199 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 B3GALNT1O75752 331 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 TSPOP30536 169 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 CCL18P55774 89 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 SPINK13Q1W4C9 94 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 BAP18Q8IXM2 172 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 CCDC71LQ8N9Z2 235 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 OR11H7Q8NGC8 314 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 OR52I2Q8NH67 350 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 TERB2Q8NHR7 220 aa10.65□□□□□ -0.7
MCF2L-228ENST00000487354 RBPMSQ93062 196 aaKnown RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms