RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 HSPB8Q9UJY1 196 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 EPDR1Q9UM22 224 aa10.76□□□□□ -0.69
USP40-214ENST00000483519 SRRM4A7MD48 611 aaKnown RBP10.75□□□□□ -0.69
USP40-214ENST00000483519 SLC25A5P05141 298 aaKnown RBP10.75□□□□□ -0.69
USP40-214ENST00000483519 GNG5P63218 68 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 ZNF841Q6ZN19 808 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 LINC00173Q6ZV60 143 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 OR10W1Q8NGF6 305 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 TCRBV4S1A1TA0A5B7 111 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 P01737 135 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 CT45A6P0DMU7 189 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 CT45A5P0DMU8 189 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 CT45A7P0DMV0 189 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 MYCNOSP40205 109 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 RNFT1Q5M7Z0 435 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 GFRA4Q9GZZ7 299 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 KLF12Q9Y4X4 402 aa10.75□□□□□ -0.69
USP40-214ENST00000483519 CACNA1AO00555 2505 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 TMEM8BA6NDV4 472 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 IGLV1-44P01699 117 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 PSG9Q00887 426 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 TMEM30BQ3MIR4 351 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 FAM71F2Q6NXP2 309 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 C22orf46C9J442 243 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 CHEK1O14757 476 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 PATE2Q6UY27 113 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 RBPMS2Q6ZRY4 209 aaKnown RBP10.74□□□□□ -0.69
USP40-214ENST00000483519 MOGAT3Q86VF5 341 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 RBMXL3Q8N7X1 1067 aaKnown RBP10.74□□□□□ -0.69
USP40-214ENST00000483519 FER1L6-AS2Q96M78 137 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 PMCHL2Q9BQD1 86 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 NDFIP1Q9BT67 221 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 PRSS22Q9GZN4 317 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 NDUFA4L2Q9NRX3 87 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 ZNF492Q9P255 531 aa10.74□□□□□ -0.69
USP40-214ENST00000483519 GAGE12BA1L429 117 aa10.73□□□□□ -0.69
USP40-214ENST00000483519 INS-IGF2F8WCM5 200 aa10.73□□□□□ -0.69
USP40-214ENST00000483519 TMEM178AQ8NBL3 297 aa10.73□□□□□ -0.69
USP40-214ENST00000483519 OSR1Q8TAX0 266 aaPredicted RBP10.73□□□□□ -0.69
USP40-214ENST00000483519 H1FXQ92522 213 aaKnown RBP10.73□□□□□ -0.69
USP40-214ENST00000483519 DAZAP1Q96EP5 407 aaKnown RBP10.73□□□□□ -0.69
USP40-214ENST00000483519 FMC1Q96HJ9 113 aa10.73□□□□□ -0.69
USP40-214ENST00000483519 PGLYRP4Q96LB8 373 aa10.73□□□□□ -0.69
USP40-214ENST00000483519 LOC102724200A0A096LPH7 203 aaPredicted RBP10.73□□□□□ -0.69
USP40-214ENST00000483519 TMEM177Q53S58 311 aa10.73□□□□□ -0.69
USP40-214ENST00000483519 SLC25A48Q6ZT89 311 aaKnown RBP10.73□□□□□ -0.69
USP40-214ENST00000483519 LINC00305Q7Z4B0 112 aa10.73□□□□□ -0.69
USP40-214ENST00000483519 GTSF1Q8WW33 167 aa10.73□□□□□ -0.69
USP40-214ENST00000483519 PERPQ96FX8 193 aa10.73□□□□□ -0.69
USP40-214ENST00000483519 MLST8Q9BVC4 326 aa10.73□□□□□ -0.69
USP40-214ENST00000483519 IGHV1-18A0A0C4DH31 117 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 FAM231BA6NCW3 169 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 APOA2P02652 100 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 GPR183P32249 361 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 SUB1P53999 127 aaKnown RBP eCLIP10.72□□□□□ -0.69
USP40-214ENST00000483519 SSBP2P81877 361 aaPredicted RBP10.72□□□□□ -0.69
USP40-214ENST00000483519 GUSBP1Q15486 140 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 NPIPB3Q92617 1050 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 HARBI1Q96MB7 349 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 CSTL1Q9H114 145 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 PGPA6NDG6 321 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 FSTL3O95633 263 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 MOSP00540 346 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 LHBP01229 141 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 PRR31Q5SQ13 230 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 RPH3ALQ9UNE2 315 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 ZNF835Q9Y2P0 537 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 DMXL1Q9Y485 3027 aa10.72□□□□□ -0.69
USP40-214ENST00000483519 A0A087X0K7 114 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 C19orf71A6NCJ1 209 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 CD24P25063 80 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 THAP8Q8NA92 274 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 BLNKQ8WV28 456 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 SGK494Q96LW2 274 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 LTAP01374 205 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 ZNF137PP52743 207 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 SEC11AP67812 179 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 LINC01545Q5VT33 79 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 BPIFA4PQ86YQ2 179 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 C5orf17Q8NAS9 161 aa10.71□□□□□ -0.69
USP40-214ENST00000483519 RPUSD1Q9UJJ7 312 aaKnown RBP10.71□□□□□ -0.69
USP40-214ENST00000483519 TNCP24821 2201 aa10.71□□□□□ -0.7
USP40-214ENST00000483519 H0Y8G0 127 aa10.71□□□□□ -0.7
USP40-214ENST00000483519 COX8AP10176 69 aa10.71□□□□□ -0.7
USP40-214ENST00000483519 KIR2DL2P43627 348 aaPredicted RBP10.71□□□□□ -0.7
USP40-214ENST00000483519 TNFRSF14Q92956 283 aa10.71□□□□□ -0.7
USP40-214ENST00000483519 FNDC4Q9H6D8 234 aaPredicted RBP10.71□□□□□ -0.7
USP40-214ENST00000483519 LINC00574Q9H8X3 128 aa10.71□□□□□ -0.7
USP40-214ENST00000483519 TANC2Q9HCD6 1990 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 DSCAML1Q8TD84 2053 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 IGKV1D-37A0A075B6S9 117 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.7□□□□□ -0.7
USP40-214ENST00000483519 TRAV8-6A0A0B4J262 113 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 C7orf71A4D174 169 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 PLAUP00749 431 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 ARF6P62330 175 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 LINC00322Q6ZN03 302 aaPredicted RBP10.7□□□□□ -0.7
USP40-214ENST00000483519 RND1Q92730 232 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 FRYQ5TBA9 3013 aa10.7□□□□□ -0.7
USP40-214ENST00000483519 AHCTF1Q8WYP5 2266 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms