RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SELENOSQ9BQE4 189 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 PBDC1Q9BVG4 233 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 PCBD2Q9H0N5 130 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 UHRF1BP1Q6BDS2 1440 aa2.05□□□□□ -2.08
UPF3B-203ENST00000478840 TRGV10A0A0A0MS01 117 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 RIMBP3CA6NJZ7 1639 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 RIMBP3BA6NNM3 1639 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 J3QKU1 62 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 OBSL1O75147 1896 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 GGCTO75223 188 aaKnown RBP2.04□□□□□ -2.08
UPF3B-203ENST00000478840 COL4A5P29400 1685 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 BCL2L15Q5TBC7 163 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 FP248Q71RG6 208 aaPredicted RBP2.04□□□□□ -2.08
UPF3B-203ENST00000478840 PBRM1Q86U86 1689 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 STX19Q8N4C7 294 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 C3orf56Q8N813 242 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 NUP35Q8NFH5 326 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 TEX37Q96LM6 180 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 Q96M85 177 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 SLC50A1Q9BRV3 221 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 SETD5Q9C0A6 1442 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 RIMBP3Q9UFD9 1639 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 HS3ST2Q9Y278 367 aa2.04□□□□□ -2.08
UPF3B-203ENST00000478840 RGS12O14924 1447 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 RIIAD1A6NNX1 92 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 BANF1O75531 89 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 CRPP02741 224 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 UBBP0CG47 229 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 IDO1P14902 403 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 LINC00471Q8N535 108 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 OR2T10Q8NGZ9 312 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 PLEKHB2Q96CS7 222 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 SLC35A3Q9Y2D2 325 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 MYH2Q9UKX2 1941 aa2.03□□□□□ -2.08
UPF3B-203ENST00000478840 DOCK10Q96BY6 2186 aa2.02□□□□□ -2.09
UPF3B-203ENST00000478840 TRGV2A0A075B6R0 118 aa2.02□□□□□ -2.09
UPF3B-203ENST00000478840 APOA2P02652 100 aa2.02□□□□□ -2.09
UPF3B-203ENST00000478840 KRTAP12-4P60329 112 aa2.02□□□□□ -2.09
UPF3B-203ENST00000478840 UBE2BP63146 152 aa2.02□□□□□ -2.09
UPF3B-203ENST00000478840 PHF13Q86YI8 300 aaPredicted RBP2.02□□□□□ -2.09
UPF3B-203ENST00000478840 SREK1IP1Q8N9Q2 155 aaPredicted RBP2.02□□□□□ -2.09
UPF3B-203ENST00000478840 OR10J5Q8NHC4 309 aa2.02□□□□□ -2.09
UPF3B-203ENST00000478840 GPER1Q99527 375 aa2.02□□□□□ -2.09
UPF3B-203ENST00000478840 PRADC1Q9BSG0 188 aa2.02□□□□□ -2.09
UPF3B-203ENST00000478840 PCTPQ9UKL6 214 aa2.02□□□□□ -2.09
UPF3B-203ENST00000478840 COL11A1P12107 1806 aaPredicted RBP2.02□□□□□ -2.09
UPF3B-203ENST00000478840 BRWD1Q9NSI6 2320 aa2.02□□□□□ -2.09
UPF3B-203ENST00000478840 RTTNQ86VV8 2226 aa2.01□□□□□ -2.09
UPF3B-203ENST00000478840 CSN2P05814 226 aa2.01□□□□□ -2.09
UPF3B-203ENST00000478840 DYNLT1P63172 113 aa2.01□□□□□ -2.09
UPF3B-203ENST00000478840 BRMS1LQ5PSV4 323 aa2.01□□□□□ -2.09
UPF3B-203ENST00000478840 MRPL32Q9BYC8 188 aaKnown RBP2.01□□□□□ -2.09
UPF3B-203ENST00000478840 OR2J1Q9GZK6 312 aa2.01□□□□□ -2.09
UPF3B-203ENST00000478840 BCL2L10Q9HD36 194 aa2.01□□□□□ -2.09
UPF3B-203ENST00000478840 ZCCHC11Q5TAX3 1644 aaKnown RBP2.01□□□□□ -2.09
UPF3B-203ENST00000478840 MYH3P11055 1940 aa2.01□□□□□ -2.09
UPF3B-203ENST00000478840 TRAV1-1A0A0B4J248 108 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 TRBV6-5A0A0K0K1A5 114 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 TMEM256-PLSCR3K7ERE1 68 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 GPR31O00270 319 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 CST8O60676 142 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 ASAH2BP0C7U1 165 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 GLRXP35754 106 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 TFAMQ00059 246 aaKnown RBP2□□□□□ -2.09
UPF3B-203ENST00000478840 PDE6HQ13956 83 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 ESRGQ1W209 222 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 TMEM78Q5T7P6 136 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 RPS19BP1Q86WX3 136 aaKnown RBP2□□□□□ -2.09
UPF3B-203ENST00000478840 PDZD9Q8IXQ8 264 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 SLC30A7Q8NEW0 376 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 ZNF563Q8TA94 476 aa2□□□□□ -2.09
UPF3B-203ENST00000478840 A0A1B0GV72 72 aa1.99□□□□□ -2.09
UPF3B-203ENST00000478840 NDUFB3O43676 98 aa1.99□□□□□ -2.09
UPF3B-203ENST00000478840 PIAS1O75925 651 aa1.99□□□□□ -2.09
UPF3B-203ENST00000478840 UBL3O95164 117 aa1.99□□□□□ -2.09
UPF3B-203ENST00000478840 OGNP20774 298 aaKnown RBP1.99□□□□□ -2.09
UPF3B-203ENST00000478840 NFYBP25208 207 aa1.99□□□□□ -2.09
UPF3B-203ENST00000478840 SNCBQ16143 134 aa1.99□□□□□ -2.09
UPF3B-203ENST00000478840 GPX7Q96SL4 187 aaPredicted RBP1.99□□□□□ -2.09
UPF3B-203ENST00000478840 LINC00467Q9BRT7 94 aa1.99□□□□□ -2.09
UPF3B-203ENST00000478840 DDA1Q9BW61 102 aa1.99□□□□□ -2.09
UPF3B-203ENST00000478840 RTL8AQ9BWD3 113 aa1.99□□□□□ -2.09
UPF3B-203ENST00000478840 TRGC2P03986 189 aa1.98□□□□□ -2.09
UPF3B-203ENST00000478840 MGST1P10620 155 aaKnown RBP1.98□□□□□ -2.09
UPF3B-203ENST00000478840 SSR2P43308 183 aa1.98□□□□□ -2.09
UPF3B-203ENST00000478840 INSL3P51460 131 aa1.98□□□□□ -2.09
UPF3B-203ENST00000478840 DR1Q01658 176 aa1.98□□□□□ -2.09
UPF3B-203ENST00000478840 C10orf55Q5SWW7 151 aa1.98□□□□□ -2.09
UPF3B-203ENST00000478840 SOSTDC1Q6X4U4 206 aa1.98□□□□□ -2.09
UPF3B-203ENST00000478840 LINC00311Q8N616 119 aa1.98□□□□□ -2.09
UPF3B-203ENST00000478840 CYSTM1Q9H1C7 97 aa1.98□□□□□ -2.09
UPF3B-203ENST00000478840 SOX21Q9Y651 276 aaPredicted RBP1.98□□□□□ -2.09
UPF3B-203ENST00000478840 CR1P17927 2039 aa1.98□□□□□ -2.09
UPF3B-203ENST00000478840 ADGBQ8N7X0 1667 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 NCAPD3P42695 1498 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 MAP1LC3B2A6NCE7 125 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 TLCD2A6NGC4 264 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 C2orf70A6NJV1 201 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 A8MWV9 139 aa1.97□□□□□ -2.09
UPF3B-203ENST00000478840 MRPS14O60783 128 aaKnown RBP1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms