RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	C1orf137	Q5JT78	98 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	BRMS1L	Q5PSV4	323 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	C3orf56	Q8N813	242 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044		Q8N814	137 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	TEX47	Q8TBZ9	253 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	FAM172A	Q8WUF8	416 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	OBSCN-AS1	Q96MR7	158 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	SIGMAR1	Q99720	223 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	NMNAT1	Q9HAN9	279 aa	Predicted RBP	0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	LAMB4	A4D0S4	1761 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	FMN1	Q68DA7	1419 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	KIAA1549	Q9HCM3	1950 aa		0.87	□□□□□ -2.27
PTCD3-209	ENST00000472044	CAMSAP1	Q5T5Y3	1602 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	TRBV6-8	A0A0A6YYG3	113 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	TRAV4	A0A0B4J268	109 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	INE1	O15225	51 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	CYBA	P13498	195 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	SRI	P30626	198 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	ANP32A	P39687	249 aa	Known RBP	0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	CNBP	P62633	177 aa	Known RBP	0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	ESRG	Q1W209	222 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	LIN52	Q52LA3	116 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	OR11H6	Q8NGC7	330 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	OR2T10	Q8NGZ9	312 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	KIFC1	Q9BW19	673 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	C14orf132	Q9NPU4	83 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	RASL12	Q9NYN1	266 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	ZFP30	Q9Y2G7	519 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	SCN8A	Q9UQD0	1980 aa		0.86	□□□□□ -2.27
PTCD3-209	ENST00000472044	TRAV3	A0A0B4J244	114 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	FAM159B	A6NKW6	160 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	C1orf196	B1AJZ1	125 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	CST2	P09228	141 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	DEFB113	Q30KQ7	82 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	LYRM7	Q5U5X0	104 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	LINC00301	Q8NCQ3	95 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	GNPDA2	Q8TDQ7	276 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	C4orf3	Q8WVX3	66 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	PEAK1	Q9H792	1746 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	LAMA4	Q16363	1823 aa		0.85	□□□□□ -2.27
PTCD3-209	ENST00000472044	TRBV19	A0A075B6N1	114 aa		0.84	□□□□□ -2.27
PTCD3-209	ENST00000472044	TMEM210	A6NLX4	147 aa		0.84	□□□□□ -2.27
PTCD3-209	ENST00000472044	IFNA6	P05013	189 aa		0.84	□□□□□ -2.27
PTCD3-209	ENST00000472044	ERP29	P30040	261 aa	Known RBP	0.84	□□□□□ -2.27
PTCD3-209	ENST00000472044	PIGP	P57054	158 aa		0.84	□□□□□ -2.27
PTCD3-209	ENST00000472044	PRB3	Q04118	309 aa	Predicted RBP	0.84	□□□□□ -2.27
PTCD3-209	ENST00000472044	BCL2L10	Q9HD36	194 aa		0.84	□□□□□ -2.27
PTCD3-209	ENST00000472044	ACER3	Q9NUN7	267 aa		0.84	□□□□□ -2.27
PTCD3-209	ENST00000472044	UTP11	Q9Y3A2	253 aa	Known RBP	0.84	□□□□□ -2.27
PTCD3-209	ENST00000472044	ADGRL3	Q9HAR2	1447 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	ZNF736	B4DX44	427 aa	Predicted RBP	0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	RHOB	P62745	196 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	DYNLT1	P63172	113 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	EIF5A	P63241	154 aa	Known RBP	0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	REEP5	Q00765	189 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	GDF5OS	Q5U4N7	250 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	SOSTDC1	Q6X4U4	206 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	SLAMF6	Q96DU3	332 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	PRADC1	Q9BSG0	188 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	ARL2BP	Q9Y2Y0	163 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	ALPK3	Q96L96	1907 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	CASP8AP2	Q9UKL3	1982 aa		0.83	□□□□□ -2.28
PTCD3-209	ENST00000472044	FBN2	P35556	2912 aa		0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	CLDN25	C9JDP6	229 aa		0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	SRP14	P37108	136 aa	Known RBP	0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	DEFA3	P59666	94 aa		0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	KRR1	Q13601	381 aa	Known RBP	0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	RRN3P1	Q2M238	152 aa		0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	SLC30A7	Q8NEW0	376 aa		0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	YPEL2	Q96QA6	119 aa		0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	LINC00467	Q9BRT7	94 aa		0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	IMUP	Q9GZP8	106 aa		0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	TMEM126A	Q9H061	195 aa		0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	EML5	Q05BV3	1969 aa		0.82	□□□□□ -2.28
PTCD3-209	ENST00000472044	DOCK4	Q8N1I0	1966 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	NOTCH1	P46531	2555 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	NUP98	P52948	1817 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	TRGV10	A0A0A0MS01	117 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	DHFR	P00374	187 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	ATP5G3	P48201	142 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	SERPINB9	P50453	376 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	MPV17L	Q2QL34	196 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	C22orf39	Q6P5X5	142 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	GOLT1A	Q6ZVE7	132 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044		Q8IYB0	196 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	OR10X1	Q8NGY0	326 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	C6orf62	Q9GZU0	229 aa	Predicted RBP	0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	HEATR1	Q9H583	2144 aa	Known RBP	0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	ENY2	Q9NPA8	101 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	FAM32A	Q9Y421	112 aa	Known RBP	0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	ZNF469	Q96JG9	3925 aa	Predicted RBP	0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	MYLK	Q15746	1914 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044		E9PCH4	1651 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	TNS3	Q68CZ2	1445 aa		0.81	□□□□□ -2.28
PTCD3-209	ENST00000472044	NUP210L	Q5VU65	1888 aa		0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044	GADD45G	O95257	159 aa		0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044	SERPINA1	P01009	418 aa		0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044	IFNA7	P01567	189 aa		0.8	□□□□□ -2.28
PTCD3-209	ENST00000472044	HSD11B1	P28845	292 aa		0.8	□□□□□ -2.28

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