RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 RNASE2P10153 161 aaKnown RBP9.47□□□□□ -0.89
NPHP4-204ENST00000460696 DAZAP2Q15038 168 aaPredicted RBP9.47□□□□□ -0.89
NPHP4-204ENST00000460696 C5orf17Q8NAS9 161 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 ZNF114Q8NC26 417 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 TMEM14BQ9NUH8 114 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 ZMAT5Q9UDW3 170 aaKnown RBP9.47□□□□□ -0.89
NPHP4-204ENST00000460696 A0A1B0GUS0 222 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 A0A1B0GV90 55 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 A0A1W2PRE2 83 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 TCRBV4S1A1TA0A5B7 111 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 SRRM4A7MD48 611 aaKnown RBP9.47□□□□□ -0.89
NPHP4-204ENST00000460696 CEACAM8P31997 349 aaPredicted RBP9.47□□□□□ -0.89
NPHP4-204ENST00000460696 IGFL2Q6UWQ7 119 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 RNF24Q9Y225 148 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 E7EQL1 145 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 CA7P43166 264 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 DIAPH2-AS1Q14236 149 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 AARDQ4LEZ3 155 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 CLEC2AQ6UVW9 174 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 NUP37Q8NFH4 326 aa9.47□□□□□ -0.89
NPHP4-204ENST00000460696 NCKAP5O14513 1909 aa9.46□□□□□ -0.89
NPHP4-204ENST00000460696 SPTBN5Q9NRC6 3674 aaKnown RBP9.46□□□□□ -0.89
NPHP4-204ENST00000460696 GATA4P43694 442 aa9.46□□□□□ -0.89
NPHP4-204ENST00000460696 JOSD1Q15040 202 aaPredicted RBP9.46□□□□□ -0.89
NPHP4-204ENST00000460696 ST6GALNAC3Q8NDV1 305 aa9.46□□□□□ -0.89
NPHP4-204ENST00000460696 NRGNQ92686 78 aa9.46□□□□□ -0.89
NPHP4-204ENST00000460696 NEU1Q99519 415 aa9.46□□□□□ -0.89
NPHP4-204ENST00000460696 CCL19Q99731 98 aa9.46□□□□□ -0.89
NPHP4-204ENST00000460696 MAP1AP78559 2803 aaPredicted RBP9.46□□□□□ -0.89
NPHP4-204ENST00000460696 IGHV3OR16-10A0A075B7F0 116 aa9.46□□□□□ -0.9
NPHP4-204ENST00000460696 TIMM23O14925 209 aa9.46□□□□□ -0.9
NPHP4-204ENST00000460696 MAS1LP35410 378 aa9.46□□□□□ -0.9
NPHP4-204ENST00000460696 ZNF672Q499Z4 452 aaPredicted RBP9.46□□□□□ -0.9
NPHP4-204ENST00000460696 SSBP4Q9BWG4 385 aaPredicted RBP9.46□□□□□ -0.9
NPHP4-204ENST00000460696 CLEC5AQ9NY25 188 aa9.46□□□□□ -0.9
NPHP4-204ENST00000460696 IGHV2-26A0A0B4J1V2 119 aa9.46□□□□□ -0.9
NPHP4-204ENST00000460696 AREGP15514 252 aa9.46□□□□□ -0.9
NPHP4-204ENST00000460696 SPEGQ15772 3267 aa9.46□□□□□ -0.9
NPHP4-204ENST00000460696 OR2J3O76001 311 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 COL8A2P25067 703 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 MFAP4P55083 255 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 UNQ5815/PRO19632Q6UWF5 114 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 TMEM167AQ8TBQ9 72 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 CGB1A6NKQ9 187 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 TCAPO15273 167 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 GGCTO75223 188 aaKnown RBP9.45□□□□□ -0.9
NPHP4-204ENST00000460696 FOXL1Q12952 345 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 RIGQ13278 110 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 TCF24Q7RTU0 167 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 ZNF295-AS1Q8N0V1 137 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 TBL2Q9Y4P3 447 aaKnown RBP9.45□□□□□ -0.9
NPHP4-204ENST00000460696 LOC389332A0A1B0GUA5 103 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 HIGD1CA8MV81 97 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 KLF17Q5JT82 389 aaPredicted RBP9.45□□□□□ -0.9
NPHP4-204ENST00000460696 REC114Q7Z4M0 266 aa9.45□□□□□ -0.9
NPHP4-204ENST00000460696 IGHV3-49A0A0A0MS15 119 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 COMPP49747 757 aaPredicted RBP9.44□□□□□ -0.9
NPHP4-204ENST00000460696 TAS2R60P59551 318 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 PRSS8Q16651 343 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 COL5A1P20908 1838 aaPredicted RBP9.44□□□□□ -0.9
NPHP4-204ENST00000460696 MUC21A0A0G2JKD1 596 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 MUC21A0A140T8X8 626 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 ITGB1BP1O14713 200 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 OR5AL1P0C617 328 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 S100A4P26447 101 aaKnown RBP9.44□□□□□ -0.9
NPHP4-204ENST00000460696 MUC21Q5SSG8 566 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 Q9H3A6 140 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 HCFC1P51610 2035 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.44□□□□□ -0.9
NPHP4-204ENST00000460696 PROP1O75360 226 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 SCGB2A2Q13296 93 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 C19orf35Q6ZS72 473 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 OSTCQ9NRP0 149 aa9.44□□□□□ -0.9
NPHP4-204ENST00000460696 TRBV9A0A0B4J1U6 114 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 ZNF25P17030 456 aaPredicted RBP9.43□□□□□ -0.9
NPHP4-204ENST00000460696 TCTAP57738 103 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 UTF1Q5T230 341 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 TEX45Q8NA69 505 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 GPR82Q96P67 336 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 BBC3Q96PG8 261 aaPredicted RBP9.43□□□□□ -0.9
NPHP4-204ENST00000460696 SCRT1Q9BWW7 348 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 EPDR1Q9UM22 224 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 A0A1W2PPI3 338 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 FAM106CPP0CH98 169 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 BRWD1-AS2P59051 145 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 KLRD1Q13241 179 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 IGHV1-3A0A0C4DH29 117 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 GOSR1O95249 250 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 ASPHD1Q5U4P2 390 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 Q8TCH9 128 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 TPSG1Q9NRR2 321 aa9.43□□□□□ -0.9
NPHP4-204ENST00000460696 CNTFRP26992 372 aa9.42□□□□□ -0.9
NPHP4-204ENST00000460696 SPATA45Q537H7 98 aa9.42□□□□□ -0.9
NPHP4-204ENST00000460696 ZNF843Q8N446 348 aa9.42□□□□□ -0.9
NPHP4-204ENST00000460696 PMS2P5A8MQ11 134 aa9.42□□□□□ -0.9
NPHP4-204ENST00000460696 VAMP3Q15836 100 aa9.42□□□□□ -0.9
NPHP4-204ENST00000460696 ACTL10Q5JWF8 245 aa9.42□□□□□ -0.9
NPHP4-204ENST00000460696 CENPVQ7Z7K6 275 aaPredicted RBP9.42□□□□□ -0.9
NPHP4-204ENST00000460696 ATG101Q9BSB4 218 aa9.42□□□□□ -0.9
NPHP4-204ENST00000460696 PSG1P11464 419 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 107.5 ms