RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 IER3P46695 156 aa11.97□□□□□ -0.49
LDLR-202ENST00000455727 RANP62826 216 aaKnown RBP11.97□□□□□ -0.49
LDLR-202ENST00000455727 KIR3DL3Q8N743 410 aa11.97□□□□□ -0.49
LDLR-202ENST00000455727 IGHV3-21A0A0B4J1V1 117 aa11.97□□□□□ -0.49
LDLR-202ENST00000455727 TSTD3H0UI37 97 aa11.97□□□□□ -0.49
LDLR-202ENST00000455727 FXYD3Q14802 87 aa11.97□□□□□ -0.49
LDLR-202ENST00000455727 TMEM256Q8N2U0 113 aa11.97□□□□□ -0.49
LDLR-202ENST00000455727 C14orf144Q96I85 54 aa11.97□□□□□ -0.49
LDLR-202ENST00000455727 HIGD1AQ9Y241 93 aa11.97□□□□□ -0.49
LDLR-202ENST00000455727 HILPDAQ9Y5L2 63 aa11.97□□□□□ -0.49
LDLR-202ENST00000455727 SNURFLB1AK76 121 aa11.96□□□□□ -0.49
LDLR-202ENST00000455727 ESDP10768 282 aa11.96□□□□□ -0.49
LDLR-202ENST00000455727 PSG1P11464 419 aa11.96□□□□□ -0.49
LDLR-202ENST00000455727 CHRDL1Q9BU40 450 aa11.96□□□□□ -0.49
LDLR-202ENST00000455727 TMEM14CQ9P0S9 112 aa11.96□□□□□ -0.49
LDLR-202ENST00000455727 NBASA2RRP1 2371 aa11.96□□□□□ -0.5
LDLR-202ENST00000455727 ZZEF1O43149 2961 aa11.96□□□□□ -0.5
LDLR-202ENST00000455727 HRNRQ86YZ3 2850 aaPredicted RBP11.96□□□□□ -0.5
LDLR-202ENST00000455727 ATRXP46100 2492 aa11.96□□□□□ -0.5
LDLR-202ENST00000455727 PGPA6NDG6 321 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 ZNF705GA8MUZ8 300 aaPredicted RBP11.95□□□□□ -0.5
LDLR-202ENST00000455727 OOSP1A8MZH6 123 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 CRISP2P16562 243 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 Q0VG73 95 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 TMEM190Q8WZ59 177 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 MBD6Q96DN6 1003 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 RASL11BQ9BPW5 248 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 RELNP78509 3460 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 SLC25A5P05141 298 aaKnown RBP11.95□□□□□ -0.5
LDLR-202ENST00000455727 DDTP30046 118 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 CCDC144NLQ6NUI1 221 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 LHFPL4Q7Z7J7 247 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 C5orf17Q8NAS9 161 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 BLNKQ8WV28 456 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 PRO1933Q9H354 126 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 GSX1Q9H4S2 264 aaPredicted RBP11.95□□□□□ -0.5
LDLR-202ENST00000455727 SERTAD4Q9NUC0 356 aa11.95□□□□□ -0.5
LDLR-202ENST00000455727 IZUMO1RA6ND01 250 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 K7EIM0 57 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 KLRD1Q13241 179 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 C5orf64Q2M2E5 130 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 RASL11AQ6T310 242 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 TMEM136Q6ZRR5 245 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 REC114Q7Z4M0 266 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 ATG101Q9BSB4 218 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 MRPL27Q9P0M9 148 aaKnown RBP11.94□□□□□ -0.5
LDLR-202ENST00000455727 TACC2O95359 2948 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 TRAV34A0A0B4J273 112 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 IGKV1-17P01599 117 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 FRMD6-AS1P0C7T7 363 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 UBE2G1P62253 170 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 NHLRC2Q8NBF2 726 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 GRAMD2BQ96HH9 432 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 C7orf69Q9H7B7 122 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 TP53TG3Q9ULZ0 132 aa11.94□□□□□ -0.5
LDLR-202ENST00000455727 GRIFINA4D1Z8 144 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 NUPR1O60356 82 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 AMY1AP04745 511 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 PAFAH1B2P68402 229 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 MINOS1Q5TGZ0 78 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 ZNF600Q6ZNG1 722 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 NUDT10Q8NFP7 164 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 CMTM2Q8TAZ6 248 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 NUDT11Q96G61 164 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 GPR82Q96P67 336 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 SLC25A39Q9BZJ4 359 aaPredicted RBP11.93□□□□□ -0.5
LDLR-202ENST00000455727 PRORYQ9H606 182 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 MINOS1-NBL1R4GNA1 71 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 SPTBN4Q9H254 2564 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 ABCA1O95477 2261 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 A0A1B0GUS0 222 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 HLA-DQA1P01909 254 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 PAX1P15863 534 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 LYZP61626 148 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 GNG5P63218 68 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 EBI3Q14213 229 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 ZNF562Q6V9R5 426 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 WIPF2Q8TF74 440 aaPredicted RBP11.93□□□□□ -0.5
LDLR-202ENST00000455727 FMC1Q96HJ9 113 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 TMEM68Q96MH6 324 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 MLST8Q9BVC4 326 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 NAT8BQ9UHF3 227 aa11.93□□□□□ -0.5
LDLR-202ENST00000455727 A0A1W2PPR1 153 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 A6NNC1 897 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 TOMM40O96008 361 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 HIST1H1EP10412 219 aaKnown RBP11.92□□□□□ -0.5
LDLR-202ENST00000455727 IQCJQ1A5X6 159 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 VMO1Q7Z5L0 202 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 FAM168AQ92567 244 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 Q9H3A6 140 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 NPIPB5A8MRT5 1133 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 TCL1AP56279 114 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 RBM14Q96PK6 669 aaKnown RBP11.92□□□□□ -0.5
LDLR-202ENST00000455727 OTORQ9NRC9 128 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 RNF24Q9Y225 148 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 COL6A6A6NMZ7 2263 aa11.92□□□□□ -0.5
LDLR-202ENST00000455727 SPINK4O60575 86 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 TCRAP04437 139 aa11.91□□□□□ -0.5
LDLR-202ENST00000455727 SNRPCP09234 159 aaKnown RBP11.91□□□□□ -0.5
LDLR-202ENST00000455727 LINC00310P59036 64 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms