RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 RPUSD1Q9UJJ7 312 aaKnown RBP6.44□□□□□ -1.38
NEDD9-204ENST00000448183 COLQQ9Y215 455 aaPredicted RBP6.44□□□□□ -1.38
NEDD9-204ENST00000448183 PARP14Q460N5 1801 aa6.44□□□□□ -1.38
NEDD9-204ENST00000448183 TRGV2A0A075B6R0 118 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 IGKV1-5P01602 117 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 PF4P02776 101 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 C3orf79P0CE67 100 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 TDGF1P13385 188 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 RHOGP84095 191 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 HGFACQ04756 655 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 OR10W1Q8NGF6 305 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 TNFRSF14Q92956 283 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 TRAV8-4A0A0B4J246 113 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 NPIPB5A8MRT5 1133 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 DUSP14O95147 198 aaKnown RBP6.43□□□□□ -1.38
NEDD9-204ENST00000448183 SRSF6Q13247 344 aaKnown RBP6.43□□□□□ -1.38
NEDD9-204ENST00000448183 CD300EQ496F6 205 aaPredicted RBP6.43□□□□□ -1.38
NEDD9-204ENST00000448183 SPATA31B1PQ5VZV4 182 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 MRPL52Q86TS9 123 aaKnown RBP6.43□□□□□ -1.38
NEDD9-204ENST00000448183 GLMPQ8WWB7 406 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 NPFFR1Q9GZQ6 430 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 ERG28Q9UKR5 140 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 SRRM5B3KS81 715 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 BCL6BQ8N143 479 aaPredicted RBP6.43□□□□□ -1.38
NEDD9-204ENST00000448183 NABP1Q96AH0 204 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 DPH3Q96FX2 82 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 IGKV1-27A0A075B6S5 117 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 IGKV3D-20A0A0C4DH25 116 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 EFNA2O43921 213 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 GAGE2BQ13066 116 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 GAGE2EQ4V326 116 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 TMEM167AQ8TBQ9 72 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 GAGE2DQ9UEU5 116 aa6.43□□□□□ -1.38
NEDD9-204ENST00000448183 CD28P10747 220 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 LCN12Q6JVE5 192 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 TET1Q8NFU7 2136 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 MRPL27Q9P0M9 148 aaKnown RBP6.42□□□□□ -1.38
NEDD9-204ENST00000448183 HEATR1Q9H583 2144 aaKnown RBP6.42□□□□□ -1.38
NEDD9-204ENST00000448183 LOC285556D6RIA3 1793 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 LRRK1Q38SD2 2015 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 D6R8Y8 96 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 SLC25A20O43772 301 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 LAGE3Q14657 143 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 GUSBP1Q15486 140 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 ATXN8Q156A1 80 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 MPV17L2Q567V2 206 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 C10orf55Q5SWW7 151 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 TMEM42Q69YG0 159 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 MGST2Q99735 147 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 SPAG8Q99932 426 aaPredicted RBP6.42□□□□□ -1.38
NEDD9-204ENST00000448183 NAA38Q9BRA0 125 aaKnown RBP6.42□□□□□ -1.38
NEDD9-204ENST00000448183 C7orf69Q9H7B7 122 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 LTBP1Q14766 1721 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 PMS2P5A8MQ11 134 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 OVOL1O14753 267 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 TIMM23O14925 209 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 TCRAP04437 139 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 GTSCR1Q86UQ5 136 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 ZNF664Q8N3J9 261 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 RPRMLQ8N4K4 120 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 RFNGQ9Y644 331 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 CACNA1HO95180 2353 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 KIAA2026Q5HYC2 2103 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 LYL1P12980 280 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 UBE2V1Q13404 147 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 PEMTQ9UBM1 199 aa6.42□□□□□ -1.38
NEDD9-204ENST00000448183 ATRXP46100 2492 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 GGTLC3B5MD39 225 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 TMEM238C9JI98 176 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 PSPNO60542 156 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 NDUFS6O75380 124 aaKnown RBP6.41□□□□□ -1.38
NEDD9-204ENST00000448183 NCR2O95944 276 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 ADCYAP1P18509 176 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 CD24P25063 80 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 FAM168AQ92567 244 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 NCOR1O75376 2440 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 RIF1Q5UIP0 2472 aaKnown RBP6.41□□□□□ -1.38
NEDD9-204ENST00000448183 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.41□□□□□ -1.38
NEDD9-204ENST00000448183 IGHV1-18A0A0C4DH31 117 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 hDV102S1A0JD36 115 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 PSG1P11464 419 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 PRB3Q04118 309 aaPredicted RBP6.41□□□□□ -1.38
NEDD9-204ENST00000448183 C11orf68Q9H3H3 251 aaKnown RBP6.41□□□□□ -1.38
NEDD9-204ENST00000448183 CHD5Q8TDI0 1954 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 TRGV11A0A075B6L2 103 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 M0R2P5 195 aa6.41□□□□□ -1.38
NEDD9-204ENST00000448183 DMRTC2Q8IXT2 367 aaPredicted RBP6.41□□□□□ -1.38
NEDD9-204ENST00000448183 ZCCHC24Q8N2G6 241 aaKnown RBP6.41□□□□□ -1.38
NEDD9-204ENST00000448183 TRBV6-6A0A0A6YYG2 114 aa6.4□□□□□ -1.38
NEDD9-204ENST00000448183 A0A1B0GWJ7 208 aa6.4□□□□□ -1.38
NEDD9-204ENST00000448183 SYS1-DBNDD2H3BUS1 97 aa6.4□□□□□ -1.38
NEDD9-204ENST00000448183 QRFPP83859 136 aa6.4□□□□□ -1.38
NEDD9-204ENST00000448183 FAM90A2PQ658T7 463 aa6.4□□□□□ -1.38
NEDD9-204ENST00000448183 ZFAND6Q6FIF0 208 aa6.4□□□□□ -1.38
NEDD9-204ENST00000448183 MORN3Q6PF18 240 aaPredicted RBP6.4□□□□□ -1.38
NEDD9-204ENST00000448183 EXOC3-AS1Q8N2X6 119 aa6.4□□□□□ -1.38
NEDD9-204ENST00000448183 NUP35Q8NFH5 326 aa6.4□□□□□ -1.38
NEDD9-204ENST00000448183 TRGV9Q99603 122 aa6.4□□□□□ -1.38
NEDD9-204ENST00000448183 SLC25A39Q9BZJ4 359 aaPredicted RBP6.4□□□□□ -1.38
NEDD9-204ENST00000448183 A0A087X0K7 114 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms