RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 TMEM88Q6PEY1 159 aa7.46□□□□□ -1.22
HMGB4-201ENST00000425537 LINC00305Q7Z4B0 112 aa7.46□□□□□ -1.22
HMGB4-201ENST00000425537 CBLN2Q8IUK8 224 aa7.46□□□□□ -1.22
HMGB4-201ENST00000425537 TMEM37Q8WXS4 190 aa7.46□□□□□ -1.22
HMGB4-201ENST00000425537 C11orf52Q96A22 123 aa7.46□□□□□ -1.22
HMGB4-201ENST00000425537 BTF3L4Q96K17 158 aa7.46□□□□□ -1.22
HMGB4-201ENST00000425537 FAM103A1Q9BTL3 118 aaKnown RBP7.46□□□□□ -1.22
HMGB4-201ENST00000425537 C20orf24Q9BUV8 137 aa7.46□□□□□ -1.22
HMGB4-201ENST00000425537 FBXL7Q9UJT9 491 aa7.46□□□□□ -1.22
HMGB4-201ENST00000425537 WNK2Q9Y3S1 2297 aa7.46□□□□□ -1.22
HMGB4-201ENST00000425537 SPG11Q96JI7 2443 aa7.46□□□□□ -1.22
HMGB4-201ENST00000425537 TACC2O95359 2948 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 CSMD2Q7Z408 3487 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 PRRC2AP48634 2157 aaKnown RBP7.45□□□□□ -1.22
HMGB4-201ENST00000425537 IGHV3OR16-10A0A075B7F0 116 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 H3BUA1 57 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 CLDN34H7C241 214 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 NUPL2O15504 423 aaKnown RBP7.45□□□□□ -1.22
HMGB4-201ENST00000425537 IGHV4-38-2P0DP08 117 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 PSG1P11464 419 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 CD99P14209 185 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 S100PP25815 95 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 LYZP61626 148 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 ADIRFQ15847 76 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 ASPHD1Q5U4P2 390 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 BRD3OSQ6XYD6 125 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 CIARTQ8N365 385 aaPredicted RBP7.45□□□□□ -1.22
HMGB4-201ENST00000425537 NECAP1Q8NC96 275 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 OR5T1Q8NG75 326 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 OR5R1Q8NH85 324 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 ANAPC16Q96DE5 110 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 FANCD2OSQ96PS1 177 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 MRPL36Q9P0J6 103 aaKnown RBP7.45□□□□□ -1.22
HMGB4-201ENST00000425537 DMRT1Q9Y5R6 373 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 LY96Q9Y6Y9 160 aa7.45□□□□□ -1.22
HMGB4-201ENST00000425537 NAV3Q8IVL0 2385 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 A0A096LNT2 108 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 TRBV7-1A0A0A6YYK4 115 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 IGHV3-21A0A0B4J1V1 117 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 TRAV41A0A0B4J266 112 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 A6NDX4 124 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 FAM223BA6NKX1 122 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 RNF223E7ERA6 249 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 H3BUX3 64 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 ATP6V0E1O15342 81 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 TGOLN2O43493 480 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 EIF3GO75821 320 aaKnown RBP eCLIP7.44□□□□□ -1.22
HMGB4-201ENST00000425537 NDUFB4O95168 129 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 S100A9P06702 114 aaKnown RBP7.44□□□□□ -1.22
HMGB4-201ENST00000425537 EGR2P11161 476 aaPredicted RBP7.44□□□□□ -1.22
HMGB4-201ENST00000425537 ATP5G3P48201 142 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 RAB9AP51151 201 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 NDPQ00604 133 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 ECSCRQ19T08 205 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 TIGITQ495A1 244 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 RNF212Q495C1 297 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 FAM209BQ5JX69 171 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 CYB5R2Q6BCY4 276 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 PATE2Q6UY27 113 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 FAM223AQ8IWN6 122 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 EEF1AKMT3Q96AZ1 226 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 FAM167A-AS1Q96KT0 104 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 OR5B12Q96R08 314 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 SLC25A2Q9BXI2 301 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 TMEM14CQ9P0S9 112 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 ZNF580Q9UK33 172 aa7.44□□□□□ -1.22
HMGB4-201ENST00000425537 YTHDF2Q9Y5A9 579 aaKnown RBP7.44□□□□□ -1.22
HMGB4-201ENST00000425537 C9JCJ5 164 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 OR2J3O76001 311 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 BRI3O95415 125 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 IGKV1-17P01599 117 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 IGHV4-31P0DP07 118 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 ATF4P18848 351 aaPredicted RBP7.43□□□□□ -1.22
HMGB4-201ENST00000425537 C19orf35Q6ZS72 473 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 BPIFA4PQ86YQ2 179 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 OR4F17Q8NGA8 305 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 RNF125Q96EQ8 232 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 SMR3AQ99954 134 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 FOXC2Q99958 501 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 HSPB9Q9BQS6 159 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 MRPL27Q9P0M9 148 aaKnown RBP7.43□□□□□ -1.22
HMGB4-201ENST00000425537 MLXQ9UH92 298 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 CSMD1Q96PZ7 3565 aa7.43□□□□□ -1.22
HMGB4-201ENST00000425537 NOTCH2Q04721 2471 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 TRBV9A0A0B4J1U6 114 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 MDFIC2A0A1B0GVS7 189 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 WI2-2373I1.2A0A1W2PRP0 233 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 HELTA6NFD8 242 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 H7BYZ3 331 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 AP4M1O00189 453 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 BMPR1BO00238 502 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 NDUFB8O95169 186 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 IGHG2P01859 326 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 IGF1P05019 195 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 IL4P05112 153 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 OR10J4P0C629 311 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 NBEAP1P0C6P0 100 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 HIST1H1EP10412 219 aaKnown RBP7.42□□□□□ -1.22
HMGB4-201ENST00000425537 FOLR2P14207 255 aa7.42□□□□□ -1.22
HMGB4-201ENST00000425537 AKR1C3P42330 323 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms