RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 HIST1H2BMQ99879 126 aa11.83□□□□□ -0.52
CBX3-202ENST00000396386 C1RLQ9NZP8 487 aa11.83□□□□□ -0.52
CBX3-202ENST00000396386 HIGD1AQ9Y241 93 aa11.83□□□□□ -0.52
CBX3-202ENST00000396386 TYMSP04818 313 aa11.83□□□□□ -0.52
CBX3-202ENST00000396386 S100A8P05109 93 aa11.83□□□□□ -0.52
CBX3-202ENST00000396386 PSG1P11464 419 aa11.83□□□□□ -0.52
CBX3-202ENST00000396386 FAM3BP58499 235 aaPredicted RBP11.83□□□□□ -0.52
CBX3-202ENST00000396386 NDPQ00604 133 aa11.83□□□□□ -0.52
CBX3-202ENST00000396386 TCEAL7Q9BRU2 100 aa11.83□□□□□ -0.52
CBX3-202ENST00000396386 COL12A1Q99715 3063 aa11.82□□□□□ -0.52
CBX3-202ENST00000396386 NDUFS8O00217 210 aa11.82□□□□□ -0.52
CBX3-202ENST00000396386 NPFFO15130 113 aa11.82□□□□□ -0.52
CBX3-202ENST00000396386 NDUFA6P56556 154 aa11.82□□□□□ -0.52
CBX3-202ENST00000396386 CLEC12BQ2HXU8 276 aa11.82□□□□□ -0.52
CBX3-202ENST00000396386 ASPHD1Q5U4P2 390 aa11.82□□□□□ -0.52
CBX3-202ENST00000396386 ZNF329Q86UD4 541 aa11.82□□□□□ -0.52
CBX3-202ENST00000396386 FRZBQ92765 325 aa11.82□□□□□ -0.52
CBX3-202ENST00000396386 PHOX2AO14813 284 aa11.81□□□□□ -0.52
CBX3-202ENST00000396386 TRGC1P0CF51 173 aa11.81□□□□□ -0.52
CBX3-202ENST00000396386 RNF224P0DH78 156 aa11.81□□□□□ -0.52
CBX3-202ENST00000396386 CNN1P51911 297 aaKnown RBP11.81□□□□□ -0.52
CBX3-202ENST00000396386 CLEC2AQ6UVW9 174 aa11.81□□□□□ -0.52
CBX3-202ENST00000396386 TTC9CQ8N5M4 171 aa11.81□□□□□ -0.52
CBX3-202ENST00000396386 C10orf105Q8TEF2 133 aa11.81□□□□□ -0.52
CBX3-202ENST00000396386 AJUBAQ96IF1 538 aa11.81□□□□□ -0.52
CBX3-202ENST00000396386 SPOCK3Q9BQ16 436 aa11.81□□□□□ -0.52
CBX3-202ENST00000396386 IGLV11-55A0A075B6I3 123 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 IGKV1-17P01599 117 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 GP9P14770 177 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 FOXL1Q12952 345 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 Q8N9W7 124 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 IGF2BP2-AS1Q96M15 143 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 IGHV4-61A0A0C4DH41 118 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 PEX7O00628 323 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 HLA-DRB1P01911 266 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 RD3LP0DJH9 198 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 TAS2R60P59551 318 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 KLF17Q5JT82 389 aaPredicted RBP11.8□□□□□ -0.52
CBX3-202ENST00000396386 FAM120AOSQ5T036 256 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 SGMS2Q8NHU3 365 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 ZNF48Q96MX3 618 aaPredicted RBP11.8□□□□□ -0.52
CBX3-202ENST00000396386 FANCD2OSQ96PS1 177 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 CDC42EP3Q9UKI2 254 aa11.8□□□□□ -0.52
CBX3-202ENST00000396386 UBR5O95071 2799 aaPredicted RBP11.8□□□□□ -0.52
CBX3-202ENST00000396386 TRAV30A0A087WSZ9 112 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 IGHV7-81A0A0B4J1V7 117 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 A0A0U1RQK1 487 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 VWC2LB2RUY7 222 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 TOMM40O96008 361 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 HOXA5P20719 270 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 MYCNOSP40205 109 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 ATP5J2P56134 94 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 BLNKQ8WV28 456 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 IL36BQ9NZH7 164 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 HECTD1Q9ULT8 2610 aa11.79□□□□□ -0.52
CBX3-202ENST00000396386 TRAV9-1A0A075B6T8 112 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 ZNF98A6NK75 572 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 NBEAP1P0C6P0 100 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 MEOX2P50222 304 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 ERVFC1-1P60608 527 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 PAX8Q06710 450 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 ACTL10Q5JWF8 245 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 C12orf57Q99622 126 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 SLC25A39Q9BZJ4 359 aaPredicted RBP11.78□□□□□ -0.52
CBX3-202ENST00000396386 THYN1Q9P016 225 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 TMEM14CQ9P0S9 112 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 PTPN13Q12923 2485 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 NAV2Q8IVL1 2488 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 CENPVL3A0A0U1RRI6 287 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 GNG7O60262 68 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 SMIM6P0DI80 62 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 MFAP4P55083 255 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 OR5I1Q13606 314 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 LEMD1Q68G75 181 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 PIP4P2Q8N4L2 257 aa11.78□□□□□ -0.52
CBX3-202ENST00000396386 ZNF320A2RRD8 509 aa11.77□□□□□ -0.53
CBX3-202ENST00000396386 GCGP01275 180 aa11.77□□□□□ -0.53
CBX3-202ENST00000396386 SLC25A5P05141 298 aaKnown RBP11.77□□□□□ -0.53
CBX3-202ENST00000396386 CDX1P47902 265 aaPredicted RBP11.77□□□□□ -0.53
CBX3-202ENST00000396386 RANP62826 216 aaKnown RBP11.77□□□□□ -0.53
CBX3-202ENST00000396386 RPEL1Q2QD12 228 aa11.77□□□□□ -0.53
CBX3-202ENST00000396386 OSTCQ9NRP0 149 aa11.77□□□□□ -0.53
CBX3-202ENST00000396386 MRPL27Q9P0M9 148 aaKnown RBP11.77□□□□□ -0.53
CBX3-202ENST00000396386 V9GYV3 84 aa11.77□□□□□ -0.53
CBX3-202ENST00000396386 H3BRN7 92 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 SLC17A3O00476 420 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 IGLV2-8P01709 118 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 S100A9P06702 114 aaKnown RBP11.76□□□□□ -0.53
CBX3-202ENST00000396386 SNRPCP09234 159 aaKnown RBP11.76□□□□□ -0.53
CBX3-202ENST00000396386 MGST1P10620 155 aaKnown RBP11.76□□□□□ -0.53
CBX3-202ENST00000396386 EGR2P11161 476 aaPredicted RBP11.76□□□□□ -0.53
CBX3-202ENST00000396386 HIST1H1BP16401 226 aaKnown RBP11.76□□□□□ -0.53
CBX3-202ENST00000396386 YPEL3P61236 119 aaPredicted RBP11.76□□□□□ -0.53
CBX3-202ENST00000396386 ZNF600Q6ZNG1 722 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 RNF125Q96EQ8 232 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 SHANK2-AS3Q9BTD1 123 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 C21orf62Q9NYP8 219 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 ABCA2Q9BZC7 2435 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 SCGB2A1O75556 95 aa11.76□□□□□ -0.53
CBX3-202ENST00000396386 GNG5P63218 68 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms