RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 ABCC4O15439 1325 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 PQLC2LA1A4F0 135 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 H0YJX3 145 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 GSTZ1O43708 216 aaPredicted RBP-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 HUS1O60921 280 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 TRAPPC6AO75865 159 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 NDUFA3O95167 84 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 RAB3DO95716 219 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 GSTA1P08263 222 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 HBQ1P09105 142 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 CST2P09228 141 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 SMIM10L1P0DMW3 83 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 EPB41P11171 864 aaKnown RBP-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 OGNP20774 298 aaKnown RBP-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 CD200P41217 278 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 CCT5P48643 541 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 SERPINH1P50454 418 aaKnown RBP-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 DYNLT3P51808 116 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 SNU13P55769 128 aaKnown RBP-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 RAB25P57735 213 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 LINC00158P58513 81 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 TAS2R46P59540 309 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 UBE2MP61081 183 aaKnown RBP-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 ART3Q13508 389 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 OR1Q1Q15612 314 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 DGUOKQ16854 277 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 RPEL1Q2QD12 228 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 CEACAM16Q2WEN9 425 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 CCSMST1Q4G0I0 132 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 NMSQ5H8A3 153 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 FAM104BQ5XKR9 115 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 REEP3Q6NUK4 255 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 KCTD9Q7L273 389 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 CATSPER4Q7RTX7 472 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 SLC16A13Q7RTY0 426 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 STX12Q86Y82 276 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 RAB43Q86YS6 212 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 PLCZ1Q86YW0 608 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 CLYBLQ8N0X4 340 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 OR5T1Q8NG75 326 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 OR2M3Q8NG83 312 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 OR5D13Q8NGL4 314 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 OR8S1Q8NH09 359 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 FIBINQ8TAL6 211 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 SKA1Q96BD8 255 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 C12orf43Q96C57 262 aaKnown RBP-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 MSANTD3Q96H12 275 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 SMIM10Q96HG1 83 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 AP1S3Q96PC3 154 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 TSSK3Q96PN8 268 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 MTMR9Q96QG7 549 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 THUMPD2Q9BTF0 503 aaKnown RBP-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 SLC35B3Q9H1N7 401 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 OR51E2Q9H255 320 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 KCNIP2Q9NS61 270 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 PRELID1Q9Y255 219 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 SLC22A14Q9Y267 594 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 EXOSC1Q9Y3B2 195 aaKnown RBP-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 TIMM22Q9Y584 194 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 ZNF518AQ6AHZ1 1483 aa-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 FAM208AQ9UK61 1670 aaKnown RBP-2.09□□□□□ -2.74
RNU6-540P-201ENST00000384622 ABCC12Q96J65 1359 aa-2.1□□□□□ -2.74
RNU6-540P-201ENST00000384622 MYH6P13533 1939 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 TRBV7-1A0A0A6YYK4 115 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 LOC101927531A0A1B0GV80 90 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 PDZK1P1A8MUH7 402 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 HMGB1P1B2RPK0 211 aaPredicted RBP-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 H0YCG3 227 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 FARS2O95363 451 aaKnown RBP-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 SLC35E2BP0CK96 405 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 SPP1P10451 314 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 PTHLHP12272 177 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 STIP1P31948 543 aaKnown RBP-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 EIF2DP41214 584 aaKnown RBP-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 GTF2A1P52655 376 aaPredicted RBP-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 POLR2KP53803 58 aaKnown RBP-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 YBEYP58557 167 aaPredicted RBP-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 TAS2R31P59538 309 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 LCN6P62502 163 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 RPL23P62829 140 aaKnown RBP-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 FAM3AP98173 230 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 WT1-ASQ06250 92 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 TFDP2Q14188 446 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 TMED2Q15363 201 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 NDUFA9Q16795 377 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 AKIRIN2Q53H80 203 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 PDZK1Q5T2W1 519 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 STEAP4Q687X5 459 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 CNIH2Q6PI25 160 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 C4orf22Q6V702 233 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 TMEM179Q6ZVK1 233 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 SPATA19Q7Z5L4 167 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 EXOC8Q8IYI6 725 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 Q8N402 240 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 TRAM1L1Q8N609 369 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 GDPD1Q8N9F7 314 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 MSANTD4Q8NCY6 345 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 ZNF738Q8NE65 137 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 OR52L1Q8NGH7 329 aa-2.1□□□□□ -2.75
RNU6-540P-201ENST00000384622 OR13C8Q8NGS7 320 aa-2.1□□□□□ -2.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms