RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 DNAJC4Q9NNZ3 241 aa20.84■□□□□ 0.93
MSX1-201ENST00000382723 TRBV7-1A0A0A6YYK4 115 aa20.83■□□□□ 0.93
MSX1-201ENST00000382723 TRAV1-1A0A0B4J248 108 aa20.83■□□□□ 0.93
MSX1-201ENST00000382723 CTSGP08311 255 aa20.83■□□□□ 0.93
MSX1-201ENST00000382723 SETXQ7Z333 2677 aaKnown RBP20.83■□□□□ 0.93
MSX1-201ENST00000382723 PSMB11A5LHX3 300 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 HILS1P60008 231 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 LYZP61626 148 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 PATE2Q6UY27 113 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 OR1L4Q8NGR5 311 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 PBDC1Q9BVG4 233 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 NUDT19A8MXV4 375 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 NUPL2O15504 423 aaKnown RBP20.82■□□□□ 0.92
MSX1-201ENST00000382723 SCGB2A1O75556 95 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 TOMM40O96008 361 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 RNASE1P07998 156 aaKnown RBP20.82■□□□□ 0.92
MSX1-201ENST00000382723 C10orf113Q5VZT2 155 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 Q6ZSV7 163 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 MIR17HGQ75NE6 70 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 IQCF2Q8IXL9 164 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 USMG5Q96IX5 58 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 UHRF2Q96PU4 802 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 GNB4Q9HAV0 340 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 SERTAD4Q9NUC0 356 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 FUT9Q9Y231 359 aa20.82■□□□□ 0.92
MSX1-201ENST00000382723 IGHV3-11P01762 117 aa20.81■□□□□ 0.92
MSX1-201ENST00000382723 PSMB8P28062 276 aa20.81■□□□□ 0.92
MSX1-201ENST00000382723 ADMP35318 185 aa20.81■□□□□ 0.92
MSX1-201ENST00000382723 YPEL3P61236 119 aaPredicted RBP20.81■□□□□ 0.92
MSX1-201ENST00000382723 SLC35B1P78383 322 aa20.81■□□□□ 0.92
MSX1-201ENST00000382723 SRSF3P84103 164 aaKnown RBP20.81■□□□□ 0.92
MSX1-201ENST00000382723 OR51G1Q8NGK1 321 aa20.81■□□□□ 0.92
MSX1-201ENST00000382723 GATAD1Q8WUU5 269 aa20.81■□□□□ 0.92
MSX1-201ENST00000382723 PFDN5Q99471 154 aa20.81■□□□□ 0.92
MSX1-201ENST00000382723 C19orf24Q9BVV8 132 aa20.81■□□□□ 0.92
MSX1-201ENST00000382723 TMPRSS5Q9H3S3 457 aa20.81■□□□□ 0.92
MSX1-201ENST00000382723 CRYBA1P05813 215 aa20.8■□□□□ 0.92
MSX1-201ENST00000382723 IGHV3-35A0A0C4DH35 117 aa20.8■□□□□ 0.92
MSX1-201ENST00000382723 RAB19A4D1S5 217 aa20.8■□□□□ 0.92
MSX1-201ENST00000382723 COMMD1Q8N668 190 aa20.8■□□□□ 0.92
MSX1-201ENST00000382723 TMEM231Q9H6L2 316 aa20.8■□□□□ 0.92
MSX1-201ENST00000382723 GAR1Q9NY12 217 aaKnown RBP20.8■□□□□ 0.92
MSX1-201ENST00000382723 HYPMO75409 117 aa20.79■□□□□ 0.92
MSX1-201ENST00000382723 Q8WTZ3 238 aa20.79■□□□□ 0.92
MSX1-201ENST00000382723 IL4P05112 153 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 MORN5Q5VZ52 161 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 TEX38Q6PEX7 206 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 GNG13Q9P2W3 67 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 ELOA3CA0A087WX78 387 aaPredicted RBP20.78■□□□□ 0.92
MSX1-201ENST00000382723 A0A0G2JLM5 398 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 PPP5D1E7EU14 171 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 TGOLN2O43493 480 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 STAG3L2P0CL84 134 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 STAG3L3P0CL85 134 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 ARL14EPLP0DKL9 152 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 TOR2AQ5JU69 321 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 LINC00305Q7Z4B0 112 aa20.78■□□□□ 0.92
MSX1-201ENST00000382723 EIF5A2Q9GZV4 153 aaKnown RBP20.78■□□□□ 0.92
MSX1-201ENST00000382723 PLP1P60201 277 aa20.77■□□□□ 0.92
MSX1-201ENST00000382723 HAGHQ16775 308 aa20.77■□□□□ 0.92
MSX1-201ENST00000382723 EIF4E3Q8N5X7 224 aaKnown RBP20.77■□□□□ 0.92
MSX1-201ENST00000382723 ZNF491Q8N8L2 437 aa20.77■□□□□ 0.92
MSX1-201ENST00000382723 TRAV5A0A0B4J249 113 aa20.76■□□□□ 0.91
MSX1-201ENST00000382723 GUK1Q16774 197 aa20.76■□□□□ 0.91
MSX1-201ENST00000382723 RNF125Q96EQ8 232 aa20.76■□□□□ 0.91
MSX1-201ENST00000382723 RNF2Q99496 336 aa20.76■□□□□ 0.91
MSX1-201ENST00000382723 MRPL32Q9BYC8 188 aaKnown RBP20.76■□□□□ 0.91
MSX1-201ENST00000382723 PUS1Q9Y606 427 aaKnown RBP eCLIP20.76■□□□□ 0.91
MSX1-201ENST00000382723 TMEM89A2RUT3 159 aa20.76■□□□□ 0.91
MSX1-201ENST00000382723 RPLP1P05386 114 aaKnown RBP20.76■□□□□ 0.91
MSX1-201ENST00000382723 JMJD8Q96S16 334 aa20.76■□□□□ 0.91
MSX1-201ENST00000382723 TREM1Q9NP99 234 aa20.76■□□□□ 0.91
MSX1-201ENST00000382723 TECRQ9NZ01 308 aaKnown RBP20.76■□□□□ 0.91
MSX1-201ENST00000382723 HIGD1AQ9Y241 93 aa20.76■□□□□ 0.91
MSX1-201ENST00000382723 CXorf1O96002 111 aa20.75■□□□□ 0.91
MSX1-201ENST00000382723 TRBV12-3P01733 135 aa20.75■□□□□ 0.91
MSX1-201ENST00000382723 FOXE3Q13461 319 aa20.75■□□□□ 0.91
MSX1-201ENST00000382723 OR4X2Q8NGF9 303 aa20.75■□□□□ 0.91
MSX1-201ENST00000382723 OR5B12Q96R08 314 aa20.75■□□□□ 0.91
MSX1-201ENST00000382723 RARRES2Q99969 163 aa20.75■□□□□ 0.91
MSX1-201ENST00000382723 WI2-2373I1.2A0A1W2PRP0 233 aa20.74■□□□□ 0.91
MSX1-201ENST00000382723 IGHV3OR16-8A0A075B7F1 116 aa20.74■□□□□ 0.91
MSX1-201ENST00000382723 RBFOX3A6NFN3 312 aa20.74■□□□□ 0.91
MSX1-201ENST00000382723 I3L521 148 aa20.74■□□□□ 0.91
MSX1-201ENST00000382723 C8orf88P0DMB2 117 aa20.74■□□□□ 0.91
MSX1-201ENST00000382723 ARL3P36405 182 aa20.74■□□□□ 0.91
MSX1-201ENST00000382723 ZNF600Q6ZNG1 722 aa20.74■□□□□ 0.91
MSX1-201ENST00000382723 NARS2Q96I59 477 aaKnown RBP20.74■□□□□ 0.91
MSX1-201ENST00000382723 OR7C2O60412 319 aa20.73■□□□□ 0.91
MSX1-201ENST00000382723 CRLF1O75462 422 aa20.73■□□□□ 0.91
MSX1-201ENST00000382723 OR2C1O95371 312 aa20.73■□□□□ 0.91
MSX1-201ENST00000382723 ELANEP08246 267 aa20.73■□□□□ 0.91
MSX1-201ENST00000382723 TAS2R45P59539 299 aa20.73■□□□□ 0.91
MSX1-201ENST00000382723 RPL15P61313 204 aaKnown RBP20.73■□□□□ 0.91
MSX1-201ENST00000382723 USF2Q15853 346 aaPredicted RBP20.73■□□□□ 0.91
MSX1-201ENST00000382723 ATP6V0BQ99437 205 aa20.73■□□□□ 0.91
MSX1-201ENST00000382723 SCRT1Q9BWW7 348 aa20.73■□□□□ 0.91
MSX1-201ENST00000382723 SLC25A2Q9BXI2 301 aa20.73■□□□□ 0.91
MSX1-201ENST00000382723 MRPL27Q9P0M9 148 aaKnown RBP20.73■□□□□ 0.91
MSX1-201ENST00000382723 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms