RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 HOXD4P09016 255 aaPredicted RBP3.9□□□□□ -1.79
SCN1A-202ENST00000375405 MAJINQ3KP22 176 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 C1QTNF12Q5T7M4 302 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 Q6Q795 121 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 BMPERQ8N8U9 685 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 KCPQ6ZWJ8 1503 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 PIK3C2AO00443 1686 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 TRBV5-7A0A0A0MS05 114 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 PAX9P55771 341 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 Q6ZQT7 251 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 FAM231DQ6ZW35 169 aa3.9□□□□□ -1.79
SCN1A-202ENST00000375405 A0A1B0GUT8 65 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 MSGN1A6NI15 193 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 KLF17Q5JT82 389 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-202ENST00000375405 THAP10Q9P2Z0 257 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-202ENST00000375405 ABCA2Q9BZC7 2435 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 C8orf88P0DMB2 117 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 PSG3Q16557 428 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 KLHDC9Q8NEP7 349 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 ZNRF2Q8NHG8 242 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 MS4A6EQ96DS6 147 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 TTTY12Q9BZ98 90 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 C5P01031 1676 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 ECM29Q5VYK3 1845 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 MYMXA0A1B0GTQ4 84 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 PLPP3O14495 311 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 PTP4A3O75365 173 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 TFF1P04155 84 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 NPSP0C0P6 89 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 BSPH1Q075Z2 132 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 FAM53BQ14153 422 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 WDR38Q5JTN6 314 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 ZNF329Q86UD4 541 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 TRBV5-3A0A0A0MS03 114 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 SHISA9B4DS77 424 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 IGFBP3P17936 291 aaPredicted RBP3.89□□□□□ -1.79
SCN1A-202ENST00000375405 XCL1P47992 114 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 RHOGP84095 191 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 FAM104BQ5XKR9 115 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 DRAM1Q8N682 238 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 DPM3Q9P2X0 92 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 IGKV1-39P01597 117 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 IGKV1-5P01602 117 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 IGKV1D-39P04432 117 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 EVX1P49640 407 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 SUPT4H1P63272 117 aaKnown RBP3.89□□□□□ -1.79
SCN1A-202ENST00000375405 EFNB3Q15768 340 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 MORN5Q5VZ52 161 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 PAQR9Q6ZVX9 377 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 WDYHV1Q96HA8 205 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 FIZ1Q96SL8 496 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 IGKV1D-16P01601 117 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 IGKV1-16P04430 117 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 NDPQ00604 133 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 HRCT1Q6UXD1 115 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 CYS1Q717R9 158 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 FGFRL1Q8N441 504 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 CMC2Q9NRP2 79 aa3.89□□□□□ -1.79
SCN1A-202ENST00000375405 C9JAW5 83 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 UBE2V2Q15819 145 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 CENPWQ5EE01 88 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 SPINK6Q6UWN8 80 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 FGF14Q92915 247 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 MON2Q7Z3U7 1717 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 GBF1Q92538 1859 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 COL2A1P02458 1487 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-202ENST00000375405 PHLPP1O60346 1717 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 SMIM27A0A1W2PRY6 76 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 hDV102S1A0JD36 115 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 IGKCP01834 107 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 CELA3BP08861 270 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 LYZL2Q7Z4W2 148 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 ATP5L2Q7Z4Y8 100 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 CIARTQ8N365 385 aaPredicted RBP3.88□□□□□ -1.79
SCN1A-202ENST00000375405 OTOSQ8NHW6 89 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 Q96MF0 132 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 TIMM21Q9BVV7 248 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 SLIRPQ9GZT3 109 aaKnown RBP3.88□□□□□ -1.79
SCN1A-202ENST00000375405 CAMTA1Q9Y6Y1 1673 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 A0A087WWL8 130 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 UPK3AO75631 287 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 UCN2Q96RP3 112 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 B9D2Q9BPU9 175 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 PRCDQ00LT1 54 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 TGIF1Q15583 401 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 DDX60Q8IY21 1712 aaKnown RBP3.88□□□□□ -1.79
SCN1A-202ENST00000375405 FABP5P3A8MUU1 101 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 NBEAP1P0C6P0 100 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 AZU1P20160 251 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 EWSR1Q01844 656 aaKnown RBP eCLIP3.88□□□□□ -1.79
SCN1A-202ENST00000375405 RND3P61587 244 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 WFDC5Q8TCV5 224 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 UBR2Q8IWV8 1755 aa3.88□□□□□ -1.79
SCN1A-202ENST00000375405 KNCNA6PVL3 124 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 SAMD5Q5TGI4 173 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 Q6ZVQ6 151 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 ST6GALNAC2Q9UJ37 374 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-202ENST00000375405 RNF223E7ERA6 249 aa3.87□□□□□ -1.79
SCN1A-202ENST00000375405 J3QT63 122 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms