RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ERHP84090 104 aaKnown RBP18.04■□□□□ 0.48
TRIM28-202ENST00000341753 WT1-ASQ06250 92 aa18.04■□□□□ 0.48
TRIM28-202ENST00000341753 ETFRF1Q6IPR1 90 aa18.04■□□□□ 0.48
TRIM28-202ENST00000341753 GAFA1Q96PS6 74 aa18.04■□□□□ 0.48
TRIM28-202ENST00000341753 PMCHL2Q9BQD1 86 aa18.04■□□□□ 0.48
TRIM28-202ENST00000341753 NDUFA4L2Q9NRX3 87 aa18.04■□□□□ 0.48
TRIM28-202ENST00000341753 PCNX1Q96RV3 2341 aa18.04■□□□□ 0.48
TRIM28-202ENST00000341753 PGPA6NDG6 321 aa18.04■□□□□ 0.48
TRIM28-202ENST00000341753 SLC25A48Q6ZT89 311 aaKnown RBP18.04■□□□□ 0.48
TRIM28-202ENST00000341753 RBMXL3Q8N7X1 1067 aaKnown RBP18.04■□□□□ 0.48
TRIM28-202ENST00000341753 CBY3A6NI87 242 aa18.03■□□□□ 0.48
TRIM28-202ENST00000341753 K7EP13 123 aa18.03■□□□□ 0.48
TRIM28-202ENST00000341753 TM4SF5O14894 197 aa18.03■□□□□ 0.48
TRIM28-202ENST00000341753 GTSF1Q8WW33 167 aa18.03■□□□□ 0.48
TRIM28-202ENST00000341753 IGKV1D-37A0A075B6S9 117 aa18.03■□□□□ 0.48
TRIM28-202ENST00000341753 HBBP68871 147 aa18.03■□□□□ 0.48
TRIM28-202ENST00000341753 ZNF474Q6S9Z5 364 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-202ENST00000341753 ZNF430Q9H8G1 570 aaPredicted RBP18.03■□□□□ 0.48
TRIM28-202ENST00000341753 SLC25A15Q9Y619 301 aa18.03■□□□□ 0.48
TRIM28-202ENST00000341753 TANC2Q9HCD6 1990 aa18.02■□□□□ 0.48
TRIM28-202ENST00000341753 DIAPH2-AS1Q14236 149 aa18.02■□□□□ 0.48
TRIM28-202ENST00000341753 PDPNQ86YL7 162 aa18.02■□□□□ 0.48
TRIM28-202ENST00000341753 RPUSD1Q9UJJ7 312 aaKnown RBP18.02■□□□□ 0.48
TRIM28-202ENST00000341753 EPDR1Q9UM22 224 aa18.02■□□□□ 0.48
TRIM28-202ENST00000341753 RAI1Q7Z5J4 1906 aaPredicted RBP18.02■□□□□ 0.48
TRIM28-202ENST00000341753 IGHV3-21A0A0B4J1V1 117 aa18.02■□□□□ 0.48
TRIM28-202ENST00000341753 SYS1-DBNDD2H3BUS1 97 aa18.02■□□□□ 0.48
TRIM28-202ENST00000341753 APELAP0DMC3 54 aa18.02■□□□□ 0.48
TRIM28-202ENST00000341753 ANKRD39Q53RE8 183 aa18.02■□□□□ 0.48
TRIM28-202ENST00000341753 C22orf34Q6ZV56 151 aa18.02■□□□□ 0.48
TRIM28-202ENST00000341753 OR1B1Q8NGR6 318 aa18.02■□□□□ 0.48
TRIM28-202ENST00000341753 ACACAQ13085 2346 aa18.02■□□□□ 0.47
TRIM28-202ENST00000341753 OR2T8A6NH00 312 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 FSTL3O95633 263 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 Q71RC1 249 aaPredicted RBP18.01■□□□□ 0.47
TRIM28-202ENST00000341753 ZADH2Q8N4Q0 377 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 CACNG8Q8WXS5 425 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 MUC21A0A0G2JKD1 596 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 MUC21A0A140T8X8 626 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 LEPROTL1O95214 131 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 MUC21Q5SSG8 566 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 OR1L4Q8NGR5 311 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 RAB9BQ9NP90 201 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 RNF7Q9UBF6 113 aa18.01■□□□□ 0.47
TRIM28-202ENST00000341753 TCRBV4S1A1TA0A5B7 111 aa18■□□□□ 0.47
TRIM28-202ENST00000341753 CGB1A6NKQ9 187 aa18■□□□□ 0.47
TRIM28-202ENST00000341753 TOX4O94842 621 aa18■□□□□ 0.47
TRIM28-202ENST00000341753 BPIFB3P59826 476 aa18■□□□□ 0.47
TRIM28-202ENST00000341753 RPP21Q9H633 154 aaKnown RBP18■□□□□ 0.47
TRIM28-202ENST00000341753 FAM215AQ9Y5M1 114 aa18■□□□□ 0.47
TRIM28-202ENST00000341753 TAX1BP3O14907 124 aa18■□□□□ 0.47
TRIM28-202ENST00000341753 CCL3L1P16619 93 aa18■□□□□ 0.47
TRIM28-202ENST00000341753 CDKN1BP46527 198 aa18■□□□□ 0.47
TRIM28-202ENST00000341753 TMEM177Q53S58 311 aa18■□□□□ 0.47
TRIM28-202ENST00000341753 ABCA1O95477 2261 aa18■□□□□ 0.47
TRIM28-202ENST00000341753 DYSFO75923 2080 aa17.99■□□□□ 0.47
TRIM28-202ENST00000341753 CSN3P07498 182 aa17.99■□□□□ 0.47
TRIM28-202ENST00000341753 ZC2HC1AQ96GY0 325 aa17.99■□□□□ 0.47
TRIM28-202ENST00000341753 PSG1P11464 419 aa17.99■□□□□ 0.47
TRIM28-202ENST00000341753 TNFAIP6P98066 277 aaPredicted RBP17.99■□□□□ 0.47
TRIM28-202ENST00000341753 ATP5L2Q7Z4Y8 100 aa17.99■□□□□ 0.47
TRIM28-202ENST00000341753 CHRDL1Q9BU40 450 aa17.99■□□□□ 0.47
TRIM28-202ENST00000341753 APOA2P02652 100 aa17.98■□□□□ 0.47
TRIM28-202ENST00000341753 MYCNOSP40205 109 aa17.98■□□□□ 0.47
TRIM28-202ENST00000341753 LRRC10Q5BKY1 277 aa17.98■□□□□ 0.47
TRIM28-202ENST00000341753 BVES-AS1Q5T3Y7 98 aa17.98■□□□□ 0.47
TRIM28-202ENST00000341753 HCP5Q6MZN7 132 aa17.98■□□□□ 0.47
TRIM28-202ENST00000341753 TPSG1Q9NRR2 321 aa17.98■□□□□ 0.47
TRIM28-202ENST00000341753 P01737 135 aa17.98■□□□□ 0.47
TRIM28-202ENST00000341753 SAPCD1Q5SSQ6 148 aa17.98■□□□□ 0.47
TRIM28-202ENST00000341753 GPR82Q96P67 336 aa17.98■□□□□ 0.47
TRIM28-202ENST00000341753 ST20Q9HBF5 79 aa17.98■□□□□ 0.47
TRIM28-202ENST00000341753 TRAV8-1A0A0A6YYK1 113 aa17.97■□□□□ 0.47
TRIM28-202ENST00000341753 FOXE3Q13461 319 aa17.97■□□□□ 0.47
TRIM28-202ENST00000341753 LDLRAD2Q5SZI1 272 aa17.97■□□□□ 0.47
TRIM28-202ENST00000341753 FLYWCH2Q96CP2 140 aaKnown RBP17.97■□□□□ 0.47
TRIM28-202ENST00000341753 MUC6Q6W4X9 2439 aa17.97■□□□□ 0.47
TRIM28-202ENST00000341753 A0A087X0K7 114 aa17.97■□□□□ 0.47
TRIM28-202ENST00000341753 SNAI2O43623 268 aa17.97■□□□□ 0.47
TRIM28-202ENST00000341753 ATP5IP56385 69 aaPredicted RBP17.97■□□□□ 0.47
TRIM28-202ENST00000341753 SLC25A34Q6PIV7 304 aa17.97■□□□□ 0.47
TRIM28-202ENST00000341753 OSR1Q8TAX0 266 aaPredicted RBP17.97■□□□□ 0.47
TRIM28-202ENST00000341753 FAM222BQ8WU58 562 aa17.97■□□□□ 0.47
TRIM28-202ENST00000341753 ASCL2Q99929 193 aa17.97■□□□□ 0.47
TRIM28-202ENST00000341753 APC2O95996 2303 aa17.97■□□□□ 0.47
TRIM28-202ENST00000341753 TRAV30A0A087WSZ9 112 aa17.96■□□□□ 0.47
TRIM28-202ENST00000341753 MBD3L4A6NDZ8 208 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-202ENST00000341753 MBD3L3A6NE82 208 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-202ENST00000341753 MBD3L5A6NJ08 208 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-202ENST00000341753 C22orf46C9J442 243 aa17.96■□□□□ 0.47
TRIM28-202ENST00000341753 MBD3L2Q8NHZ7 208 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-202ENST00000341753 CEACAM4O75871 244 aa17.96■□□□□ 0.47
TRIM28-202ENST00000341753 IGHV1-46P01743 117 aa17.96■□□□□ 0.47
TRIM28-202ENST00000341753 FAM87AP0C7U9 286 aa17.96■□□□□ 0.47
TRIM28-202ENST00000341753 FAM27E3Q08E93 113 aa17.96■□□□□ 0.47
TRIM28-202ENST00000341753 AMMECR1LQ6DCA0 310 aa17.96■□□□□ 0.47
TRIM28-202ENST00000341753 ZNF833PQ6ZTB9 187 aa17.96■□□□□ 0.47
TRIM28-202ENST00000341753 GSX1Q9H4S2 264 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-202ENST00000341753 ZNF835Q9Y2P0 537 aa17.96■□□□□ 0.47
TRIM28-202ENST00000341753 NBEAP1P0C6P0 100 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 115.7 ms