RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 ATRAIDQ6UW56 229 aa11.24□□□□□ -0.61
SIX4-201ENST00000216513 TRGC1P0CF51 173 aa11.24□□□□□ -0.61
SIX4-201ENST00000216513 SERF2P84101 59 aa11.24□□□□□ -0.61
SIX4-201ENST00000216513 CCL1P22362 96 aa11.24□□□□□ -0.61
SIX4-201ENST00000216513 ATP5IP56385 69 aaPredicted RBP11.24□□□□□ -0.61
SIX4-201ENST00000216513 IGFL4Q6B9Z1 124 aa11.24□□□□□ -0.61
SIX4-201ENST00000216513 IGFL2Q6UWQ7 119 aa11.24□□□□□ -0.61
SIX4-201ENST00000216513 ANAPC1Q9H1A4 1944 aa11.24□□□□□ -0.61
SIX4-201ENST00000216513 RPL15P61313 204 aaKnown RBP11.24□□□□□ -0.61
SIX4-201ENST00000216513 FOXL1Q12952 345 aa11.24□□□□□ -0.61
SIX4-201ENST00000216513 OR11H1Q8NG94 326 aa11.24□□□□□ -0.61
SIX4-201ENST00000216513 MBNL3Q9NUK0 354 aaKnown RBP11.24□□□□□ -0.61
SIX4-201ENST00000216513 IGKV1-27A0A075B6S5 117 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 PPP1R17O96001 155 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 IGHV4-39P01824 125 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 SCGB1A1P11684 91 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 DUTP33316 252 aaKnown RBP11.23□□□□□ -0.61
SIX4-201ENST00000216513 ZNF345Q14585 488 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 FBLN7Q53RD9 439 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 CUL9Q8IWT3 2517 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 C15orf61A6NNL5 157 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 IGHV3-53P01767 116 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 IGHV4-59P01825 116 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 VSIRQ9H7M9 311 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 OVOL1O14753 267 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 RPS20P60866 119 aaKnown RBP11.23□□□□□ -0.61
SIX4-201ENST00000216513 DTX2Q86UW9 622 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 USMG5Q96IX5 58 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 OVOL3O00110 214 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 MEIG1Q5JSS6 88 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 OR52E5Q8NH55 327 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 IGFBPL1Q8WX77 278 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 RNASE7Q9H1E1 156 aaKnown RBP11.23□□□□□ -0.61
SIX4-201ENST00000216513 TMEM160Q9NX00 188 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 C2orf16Q68DN1 1984 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 CA1P00915 261 aaPredicted RBP11.23□□□□□ -0.61
SIX4-201ENST00000216513 PYYP10082 97 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 COX19Q49B96 90 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 ZNF324BQ6AW86 544 aaPredicted RBP11.23□□□□□ -0.61
SIX4-201ENST00000216513 HIST1H4GQ99525 98 aa11.23□□□□□ -0.61
SIX4-201ENST00000216513 GFI1Q99684 422 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 SAPCD1Q5SSQ6 148 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 NPCDR1Q9BY65 106 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 NPDC1Q9NQX5 325 aaPredicted RBP11.22□□□□□ -0.61
SIX4-201ENST00000216513 PLXND1Q9Y4D7 1925 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 DEFB130BP0DP73 79 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 DEFB130AP0DP74 79 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 IGHV3-73A0A0B4J1V6 119 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 TRAV5A0A0B4J249 113 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 C11orf68Q9H3H3 251 aaKnown RBP11.22□□□□□ -0.61
SIX4-201ENST00000216513 H7C1H1 209 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 MALP21145 153 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 SUMO2P61956 95 aaKnown RBP11.22□□□□□ -0.61
SIX4-201ENST00000216513 PVRIGQ6DKI7 326 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 OR13C6PQ8NH95 151 aa11.22□□□□□ -0.61
SIX4-201ENST00000216513 LSM4Q9Y4Z0 139 aaKnown RBP11.22□□□□□ -0.61
SIX4-201ENST00000216513 GCHFRP30047 84 aa11.21□□□□□ -0.61
SIX4-201ENST00000216513 DUX4L9Q6RFH8 374 aaPredicted RBP11.21□□□□□ -0.61
SIX4-201ENST00000216513 C14orf144Q96I85 54 aa11.21□□□□□ -0.61
SIX4-201ENST00000216513 TRBV7-1A0A0A6YYK4 115 aa11.21□□□□□ -0.61
SIX4-201ENST00000216513 PNRC2Q9NPJ4 139 aaKnown RBP11.21□□□□□ -0.61
SIX4-201ENST00000216513 ATP6V0E1O15342 81 aa11.21□□□□□ -0.61
SIX4-201ENST00000216513 PAX1P15863 534 aa11.21□□□□□ -0.61
SIX4-201ENST00000216513 SFRP2Q96HF1 295 aa11.21□□□□□ -0.61
SIX4-201ENST00000216513 COL4A4P53420 1690 aaPredicted RBP11.21□□□□□ -0.62
SIX4-201ENST00000216513 COL4A3Q01955 1670 aa11.21□□□□□ -0.62
SIX4-201ENST00000216513 LEPROTL1O95214 131 aa11.21□□□□□ -0.62
SIX4-201ENST00000216513 PLA2G2AP14555 144 aa11.21□□□□□ -0.62
SIX4-201ENST00000216513 MAP1LC3AQ9H492 121 aa11.21□□□□□ -0.62
SIX4-201ENST00000216513 C19orf24Q9BVV8 132 aa11.21□□□□□ -0.62
SIX4-201ENST00000216513 GEMIN7Q9H840 131 aaKnown RBP11.21□□□□□ -0.62
SIX4-201ENST00000216513 CLDN16Q9Y5I7 305 aa11.21□□□□□ -0.62
SIX4-201ENST00000216513 H0YJW9 148 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 FCN3O75636 299 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 IGFBP3P17936 291 aaPredicted RBP11.2□□□□□ -0.62
SIX4-201ENST00000216513 EVI2AP22794 236 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 KCNS1Q96KK3 526 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 IGHV3-64A0A075B6Q5 118 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 FAM223BA6NKX1 122 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 GZMBP10144 247 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 PKIAP61925 76 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 FAM223AQ8IWN6 122 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 LGALS3P17931 250 aaKnown RBP11.2□□□□□ -0.62
SIX4-201ENST00000216513 KIR2DL4Q99706 377 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 DKK4Q9UBT3 224 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 ZNF256Q9Y2P7 627 aaPredicted RBP11.2□□□□□ -0.62
SIX4-201ENST00000216513 NOTCH2Q04721 2471 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 IGHV2-5P01817 119 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 ASPHD1Q5U4P2 390 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 SPSB4Q96A44 273 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 TRBV20OR9-2A0A075B6H5 130 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 TRGV1A0A0A0MS02 117 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 Q8NA96 180 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 OR4D5Q8NGN0 318 aa11.2□□□□□ -0.62
SIX4-201ENST00000216513 TRAV8-6A0A0B4J262 113 aa11.19□□□□□ -0.62
SIX4-201ENST00000216513 OR1P1Q8NH06 330 aa11.19□□□□□ -0.62
SIX4-201ENST00000216513 ALX4Q9H161 411 aaPredicted RBP11.19□□□□□ -0.62
SIX4-201ENST00000216513 LIME1Q9H400 295 aa11.19□□□□□ -0.62
SIX4-201ENST00000216513 G3V318 75 aa11.19□□□□□ -0.62
SIX4-201ENST00000216513 GCGP01275 180 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms