RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 GUCA2BQ16661 112 aa14.44□□□□□ -0.1
CLN3-260ENST00000637578 TUBA4BQ9H853 241 aa14.44□□□□□ -0.1
CLN3-260ENST00000637578 DAZ1Q9NQZ3 744 aaKnown RBP14.44□□□□□ -0.1
CLN3-260ENST00000637578 MGAT4CQ9UBM8 478 aa14.44□□□□□ -0.1
CLN3-260ENST00000637578 TRAV25A0A0B4J276 109 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 K7EMT4 169 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 TMEM50AO95807 157 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 IGHV3-48P01763 117 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 MFAP4P55083 255 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 H2BFSP57053 126 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 Q56UQ5 140 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 BTNL8Q6UX41 500 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 C15orf62A8K5M9 175 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 CORTO00230 105 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 UBAC2Q8NBM4 344 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 FNDC4Q9H6D8 234 aaPredicted RBP14.43□□□□□ -0.1
CLN3-260ENST00000637578 SELENOKQ9Y6D0 94 aa14.43□□□□□ -0.1
CLN3-260ENST00000637578 H3BP45 60 aa14.42□□□□□ -0.1
CLN3-260ENST00000637578 OPRK1P41145 380 aa14.42□□□□□ -0.1
CLN3-260ENST00000637578 NOXA1Q86UR1 476 aa14.42□□□□□ -0.1
CLN3-260ENST00000637578 DEFB125Q8N687 156 aa14.42□□□□□ -0.1
CLN3-260ENST00000637578 MED28Q9H204 178 aa14.42□□□□□ -0.1
CLN3-260ENST00000637578 LSM5Q9Y4Y9 91 aaKnown RBP14.42□□□□□ -0.1
CLN3-260ENST00000637578 KMT2CQ8NEZ4 4911 aaKnown RBP14.42□□□□□ -0.1
CLN3-260ENST00000637578 OR11H12B2RN74 326 aa14.41□□□□□ -0.1
CLN3-260ENST00000637578 K7EPK0 472 aa14.41□□□□□ -0.1
CLN3-260ENST00000637578 PAX9P55771 341 aa14.41□□□□□ -0.1
CLN3-260ENST00000637578 ATP5IP56385 69 aaPredicted RBP14.41□□□□□ -0.1
CLN3-260ENST00000637578 S100A10P60903 97 aa14.41□□□□□ -0.1
CLN3-260ENST00000637578 RAB32Q13637 225 aa14.41□□□□□ -0.1
CLN3-260ENST00000637578 FCN2Q15485 313 aa14.41□□□□□ -0.1
CLN3-260ENST00000637578 SPANXN5Q5MJ07 72 aa14.41□□□□□ -0.1
CLN3-260ENST00000637578 RNASEH2CQ8TDP1 164 aaKnown RBP14.41□□□□□ -0.1
CLN3-260ENST00000637578 RAB40CQ96S21 281 aa14.41□□□□□ -0.1
CLN3-260ENST00000637578 PAIP2BQ9ULR5 123 aaKnown RBP14.41□□□□□ -0.1
CLN3-260ENST00000637578 DNAH7Q8WXX0 4024 aa14.41□□□□□ -0.1
CLN3-260ENST00000637578 RBMY1BA6NDE4 496 aaKnown RBP14.4□□□□□ -0.1
CLN3-260ENST00000637578 RBMY1EA6NEQ0 496 aaKnown RBP14.4□□□□□ -0.1
CLN3-260ENST00000637578 NUPL2O15504 423 aaKnown RBP14.4□□□□□ -0.1
CLN3-260ENST00000637578 IFNA4P05014 189 aa14.4□□□□□ -0.1
CLN3-260ENST00000637578 RBMY1DP0C7P1 496 aaKnown RBP14.4□□□□□ -0.1
CLN3-260ENST00000637578 CXCL3P19876 107 aa14.4□□□□□ -0.1
CLN3-260ENST00000637578 RELQ04864 619 aaPredicted RBP14.4□□□□□ -0.1
CLN3-260ENST00000637578 MLANAQ16655 118 aa14.4□□□□□ -0.1
CLN3-260ENST00000637578 SLC16A13Q7RTY0 426 aa14.4□□□□□ -0.1
CLN3-260ENST00000637578 SMIM8Q96KF7 97 aa14.4□□□□□ -0.1
CLN3-260ENST00000637578 SPATA25Q9BR10 227 aa14.4□□□□□ -0.1
CLN3-260ENST00000637578 NMES1Q9C002 83 aa14.4□□□□□ -0.1
CLN3-260ENST00000637578 WFDC10AQ9H1F0 79 aa14.4□□□□□ -0.1
CLN3-260ENST00000637578 PSENENQ9NZ42 101 aa14.4□□□□□ -0.1
CLN3-260ENST00000637578 C3orf84H3BNL1 204 aa14.39□□□□□ -0.11
CLN3-260ENST00000637578 SCAF4O95104 1147 aaKnown RBP14.39□□□□□ -0.11
CLN3-260ENST00000637578 RPP30P78346 268 aaKnown RBP14.39□□□□□ -0.11
CLN3-260ENST00000637578 RBPMS2Q6ZRY4 209 aaKnown RBP14.39□□□□□ -0.11
CLN3-260ENST00000637578 OR11H7Q8NGC8 314 aa14.39□□□□□ -0.11
CLN3-260ENST00000637578 CITED4Q96RK1 184 aa14.39□□□□□ -0.11
CLN3-260ENST00000637578 STRAPQ9Y3F4 350 aaKnown RBP14.39□□□□□ -0.11
CLN3-260ENST00000637578 TSPAN4O14817 238 aa14.39□□□□□ -0.11
CLN3-260ENST00000637578 CYCSP99999 105 aaKnown RBP14.39□□□□□ -0.11
CLN3-260ENST00000637578 C20orf24Q9BUV8 137 aa14.39□□□□□ -0.11
CLN3-260ENST00000637578 C11orf1Q9H5F2 150 aa14.39□□□□□ -0.11
CLN3-260ENST00000637578 SRD5A3Q9H8P0 318 aa14.39□□□□□ -0.11
CLN3-260ENST00000637578 MRPL36Q9P0J6 103 aaKnown RBP14.39□□□□□ -0.11
CLN3-260ENST00000637578 IGHV3OR16-8A0A075B7F1 116 aa14.38□□□□□ -0.11
CLN3-260ENST00000637578 RPS10-NUDT3A0A1W2PQS6 291 aa14.38□□□□□ -0.11
CLN3-260ENST00000637578 TAS2R30P59541 319 aa14.38□□□□□ -0.11
CLN3-260ENST00000637578 RRAS2P62070 204 aaPredicted RBP14.38□□□□□ -0.11
CLN3-260ENST00000637578 RAB11AP62491 216 aa14.38□□□□□ -0.11
CLN3-260ENST00000637578 SPAG8Q99932 426 aaPredicted RBP14.38□□□□□ -0.11
CLN3-260ENST00000637578 SMPXQ9UHP9 88 aa14.38□□□□□ -0.11
CLN3-260ENST00000637578 L7N2F9 121 aa14.37□□□□□ -0.11
CLN3-260ENST00000637578 GNG7O60262 68 aa14.37□□□□□ -0.11
CLN3-260ENST00000637578 TSC22D2O75157 780 aa14.37□□□□□ -0.11
CLN3-260ENST00000637578 NPBWR1P48145 328 aa14.37□□□□□ -0.11
CLN3-260ENST00000637578 VAMP2P63027 116 aa14.37□□□□□ -0.11
CLN3-260ENST00000637578 LRRC37A5PQ49AS3 106 aa14.37□□□□□ -0.11
CLN3-260ENST00000637578 MUC7Q8TAX7 377 aa14.37□□□□□ -0.11
CLN3-260ENST00000637578 EDA2RQ9HAV5 297 aa14.37□□□□□ -0.11
CLN3-260ENST00000637578 PRSS54Q6PEW0 395 aa14.36□□□□□ -0.11
CLN3-260ENST00000637578 PPP1R1CQ8WVI7 109 aa14.36□□□□□ -0.11
CLN3-260ENST00000637578 NBEAL2Q6ZNJ1 2754 aa14.35□□□□□ -0.11
CLN3-260ENST00000637578 IGHV7-4-1A0A0J9YVY3 117 aa14.35□□□□□ -0.11
CLN3-260ENST00000637578 PRSS46E5RG02 174 aa14.35□□□□□ -0.11
CLN3-260ENST00000637578 ZNF207O43670 478 aaKnown RBP14.35□□□□□ -0.11
CLN3-260ENST00000637578 DEDDO75618 318 aa14.35□□□□□ -0.11
CLN3-260ENST00000637578 SLC25A4P12235 298 aa14.35□□□□□ -0.11
CLN3-260ENST00000637578 PVALBP20472 110 aaPredicted RBP14.35□□□□□ -0.11
CLN3-260ENST00000637578 RND2P52198 227 aa14.35□□□□□ -0.11
CLN3-260ENST00000637578 LAMTOR1Q6IAA8 161 aa14.35□□□□□ -0.11
CLN3-260ENST00000637578 ETFRF1Q6IPR1 90 aa14.35□□□□□ -0.11
CLN3-260ENST00000637578 TMEM14EPQ6UXP3 125 aa14.35□□□□□ -0.11
CLN3-260ENST00000637578 OR4X1Q8NH49 305 aa14.35□□□□□ -0.11
CLN3-260ENST00000637578 CHEK1O14757 476 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 CCNKO75909 580 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 METTL15P1P0C7V9 234 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 PMS2P5A8MQ11 134 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 H0YIZ8 118 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 BCAP31P51572 246 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 CAV2P51636 162 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 OR8G2PQ6IF36 304 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms