RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ZBTB34Q8NCN2 500 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 NUDCD2Q8WVJ2 157 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 HLA-DRB4X5D2U9 266 aa10.11□□□□□ -0.79
CLN3-249ENST00000636685 DNAH8Q96JB1 4490 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 FAM90A26D6RGX4 464 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 RGS5O15539 181 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 SNAPC5O75971 98 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 TMEM50AO95807 157 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 HBE1P02100 147 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 APOA1P02647 267 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 FCGR2CP31995 323 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 SDC2P34741 201 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 NPBWR1P48145 328 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 FABP5Q01469 135 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 ICAM4Q14773 271 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 GDF5OSQ5U4N7 250 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 TPRA1Q86W33 373 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 SLC5A7Q9GZV3 580 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 Q9H3A6 140 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 ANXA10Q9UJ72 324 aa10.1□□□□□ -0.79
CLN3-249ENST00000636685 KRTAP29-1A8MX34 341 aaPredicted RBP10.09□□□□□ -0.79
CLN3-249ENST00000636685 F5H768 121 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 PTTG1O95997 202 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 KRASP01116 189 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 RAB6AP20340 208 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 SNRPD3P62318 126 aaKnown RBP10.09□□□□□ -0.79
CLN3-249ENST00000636685 CLINT1Q14677 625 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 USF2Q15853 346 aaPredicted RBP10.09□□□□□ -0.79
CLN3-249ENST00000636685 AADACL3Q5VUY0 350 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 HACD4Q5VWC8 232 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 ZNF818PQ6ZRF7 136 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 C1orf158Q8N1D5 194 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 RNF141Q8WVD5 230 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 ATG5Q9H1Y0 275 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 PRNDQ9UKY0 176 aa10.09□□□□□ -0.79
CLN3-249ENST00000636685 FAT3Q8TDW7 4589 aa10.08□□□□□ -0.8
CLN3-249ENST00000636685 METTL21EPA6NDL7 271 aa10.08□□□□□ -0.8
CLN3-249ENST00000636685 ARL6IP5O75915 188 aa10.08□□□□□ -0.8
CLN3-249ENST00000636685 HNRNPCP07910 306 aaKnown RBP eCLIP10.08□□□□□ -0.8
CLN3-249ENST00000636685 G6PCP35575 357 aa10.08□□□□□ -0.8
CLN3-249ENST00000636685 FXYD4P59646 89 aa10.08□□□□□ -0.8
CLN3-249ENST00000636685 MXD1Q05195 221 aa10.08□□□□□ -0.8
CLN3-249ENST00000636685 NARS2Q96I59 477 aaKnown RBP10.08□□□□□ -0.8
CLN3-249ENST00000636685 C7orf50Q9BRJ6 194 aaKnown RBP10.08□□□□□ -0.8
CLN3-249ENST00000636685 ZNF586Q9NXT0 402 aa10.08□□□□□ -0.8
CLN3-249ENST00000636685 GOLT1BQ9Y3E0 138 aa10.08□□□□□ -0.8
CLN3-249ENST00000636685 TMEM235A6NFC5 223 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 FABP12A6NFH5 140 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 SSX5O60225 188 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 PPYP01298 95 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 CLEC2LP0C7M8 214 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 DEFB130BP0DP73 79 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 DEFB130AP0DP74 79 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 RANBP1P43487 201 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 LPAR6P43657 344 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 EIF2B2P49770 351 aaKnown RBP10.07□□□□□ -0.8
CLN3-249ENST00000636685 OR10A3P58181 314 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 RRN3P1Q2M238 152 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 CDPF1Q6NVV7 123 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 Q6ZRN7 208 aaPredicted RBP10.07□□□□□ -0.8
CLN3-249ENST00000636685 ZNF709Q8N972 641 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 ZNF114Q8NC26 417 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 GLMPQ8WWB7 406 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 DIRAS2Q96HU8 199 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 UHRF2Q96PU4 802 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 SLC35B3Q9H1N7 401 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 RHBDL2Q9NX52 303 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 PLA2G2DQ9UNK4 145 aa10.07□□□□□ -0.8
CLN3-249ENST00000636685 IFNA5P01569 189 aa10.06□□□□□ -0.8
CLN3-249ENST00000636685 LINC00315P59091 139 aa10.06□□□□□ -0.8
CLN3-249ENST00000636685 ARL6IP1Q15041 203 aa10.06□□□□□ -0.8
CLN3-249ENST00000636685 C16orf54Q6UWD8 224 aa10.06□□□□□ -0.8
CLN3-249ENST00000636685 FCAMRQ8WWV6 532 aa10.06□□□□□ -0.8
CLN3-249ENST00000636685 TMEM230Q96A57 120 aa10.06□□□□□ -0.8
CLN3-249ENST00000636685 FKBP11Q9NYL4 201 aa10.06□□□□□ -0.8
CLN3-249ENST00000636685 MRPL36Q9P0J6 103 aaKnown RBP10.06□□□□□ -0.8
CLN3-249ENST00000636685 U3KQE9 123 aa10.06□□□□□ -0.8
CLN3-249ENST00000636685 TRAV1-2A0A0B4J238 106 aa10.05□□□□□ -0.8
CLN3-249ENST00000636685 A0A1W2PPQ1 181 aa10.05□□□□□ -0.8
CLN3-249ENST00000636685 TMEM127O75204 238 aa10.05□□□□□ -0.8
CLN3-249ENST00000636685 PRM2P04554 102 aa10.05□□□□□ -0.8
CLN3-249ENST00000636685 MYL9P24844 172 aa10.05□□□□□ -0.8
CLN3-249ENST00000636685 NKX2-1P43699 371 aaPredicted RBP10.05□□□□□ -0.8
CLN3-249ENST00000636685 ARPC4P59998 168 aa10.05□□□□□ -0.8
CLN3-249ENST00000636685 SNX29P2Q8IUI4 249 aa10.05□□□□□ -0.8
CLN3-249ENST00000636685 MIXL1Q9H2W2 232 aa10.05□□□□□ -0.8
CLN3-249ENST00000636685 SEPSECSQ9HD40 501 aaKnown RBP10.05□□□□□ -0.8
CLN3-249ENST00000636685 EREGO14944 169 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 F2RP25116 425 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 HOXA1P49639 335 aaPredicted RBP10.04□□□□□ -0.8
CLN3-249ENST00000636685 AP2S1P53680 142 aaPredicted RBP10.04□□□□□ -0.8
CLN3-249ENST00000636685 GNG2P59768 71 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 TMEM17Q86X19 198 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 CADM3Q8N126 398 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 OR4B1Q8NGF8 309 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 LGALS14Q8TCE9 139 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 SDHCQ99643 169 aaPredicted RBP10.04□□□□□ -0.8
CLN3-249ENST00000636685 SOSTQ9BQB4 213 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 SRRQ9GZT4 340 aa10.04□□□□□ -0.8
CLN3-249ENST00000636685 NRN1Q9NPD7 142 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms