RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TRAV30A0A087WSZ9 112 aa13.75□□□□□ -0.21
CLN3-243ENST00000635973 K7EPK0 472 aa13.75□□□□□ -0.21
CLN3-243ENST00000635973 SIX6O95475 246 aa13.75□□□□□ -0.21
CLN3-243ENST00000635973 TMEM50AO95807 157 aa13.75□□□□□ -0.21
CLN3-243ENST00000635973 PVALBP20472 110 aaPredicted RBP13.75□□□□□ -0.21
CLN3-243ENST00000635973 TM4SF20Q53R12 229 aa13.75□□□□□ -0.21
CLN3-243ENST00000635973 IL34Q6ZMJ4 242 aa13.75□□□□□ -0.21
CLN3-243ENST00000635973 MGAT4CQ9UBM8 478 aa13.75□□□□□ -0.21
CLN3-243ENST00000635973 IGHV3OR16-8A0A075B7F1 116 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 TMEM213A2RRL7 107 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 C7orf66A4D0T2 115 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 FOLR2P14207 255 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 GP9P14770 177 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 OR10J1P30954 320 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 GPX4P36969 197 aaPredicted RBP13.74□□□□□ -0.21
CLN3-243ENST00000635973 TIGITQ495A1 244 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 ZNF600Q6ZNG1 722 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 TMEM116Q8NCL8 245 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 OR1S2Q8NGQ3 325 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 CACNG8Q8WXS5 425 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 NPIPB3Q92617 1050 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 DAZ1Q9NQZ3 744 aaKnown RBP13.74□□□□□ -0.21
CLN3-243ENST00000635973 SIGLEC8Q9NYZ4 499 aa13.74□□□□□ -0.21
CLN3-243ENST00000635973 ZNF207O43670 478 aaKnown RBP13.73□□□□□ -0.21
CLN3-243ENST00000635973 TSC22D2O75157 780 aa13.73□□□□□ -0.21
CLN3-243ENST00000635973 IGLV1-51P01701 117 aa13.73□□□□□ -0.21
CLN3-243ENST00000635973 EDN2P20800 178 aa13.73□□□□□ -0.21
CLN3-243ENST00000635973 BCAP31P51572 246 aa13.73□□□□□ -0.21
CLN3-243ENST00000635973 ELLP55199 621 aaPredicted RBP13.73□□□□□ -0.21
CLN3-243ENST00000635973 TAS2R30P59541 319 aa13.73□□□□□ -0.21
CLN3-243ENST00000635973 OR8G2PQ6IF36 304 aa13.73□□□□□ -0.21
CLN3-243ENST00000635973 METTL15P1P0C7V9 234 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 IGLC1P0CG04 106 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 CBLN1P23435 193 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 CAV2P51636 162 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 PAX9P55771 341 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 CYCSP99999 105 aaKnown RBP13.72□□□□□ -0.21
CLN3-243ENST00000635973 RAB32Q13637 225 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 GAMTQ14353 236 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 LRRC37A5PQ49AS3 106 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 MARC2Q969Z3 335 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 GINS3Q9BRX5 216 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 NMES1Q9C002 83 aa13.72□□□□□ -0.21
CLN3-243ENST00000635973 PUS1Q9Y606 427 aaKnown RBP eCLIP13.72□□□□□ -0.21
CLN3-243ENST00000635973 SMCO3A2RU48 225 aa13.71□□□□□ -0.21
CLN3-243ENST00000635973 ZFP92A6NM28 416 aa13.71□□□□□ -0.21
CLN3-243ENST00000635973 AKR1C1Q04828 323 aa13.71□□□□□ -0.21
CLN3-243ENST00000635973 LCN12Q6JVE5 192 aa13.71□□□□□ -0.21
CLN3-243ENST00000635973 TOMM20LQ6UXN7 152 aa13.71□□□□□ -0.21
CLN3-243ENST00000635973 ACOT7LQ6ZUV0 252 aa13.71□□□□□ -0.21
CLN3-243ENST00000635973 TECRQ9NZ01 308 aaKnown RBP13.71□□□□□ -0.21
CLN3-243ENST00000635973 MRPL27Q9P0M9 148 aaKnown RBP13.71□□□□□ -0.21
CLN3-243ENST00000635973 IGKV1-17P01599 117 aa13.7□□□□□ -0.22
CLN3-243ENST00000635973 BTNL8Q6UX41 500 aa13.7□□□□□ -0.22
CLN3-243ENST00000635973 TMEM14EPQ6UXP3 125 aa13.7□□□□□ -0.22
CLN3-243ENST00000635973 ADAMTSL5Q6ZMM2 481 aa13.7□□□□□ -0.22
CLN3-243ENST00000635973 OR10P1Q8NGE3 313 aa13.7□□□□□ -0.22
CLN3-243ENST00000635973 Q8WTZ3 238 aa13.7□□□□□ -0.22
CLN3-243ENST00000635973 MED28Q9H204 178 aa13.7□□□□□ -0.22
CLN3-243ENST00000635973 ZMAT4Q9H898 229 aa13.7□□□□□ -0.22
CLN3-243ENST00000635973 SELENOKQ9Y6D0 94 aa13.7□□□□□ -0.22
CLN3-243ENST00000635973 PRSS46E5RG02 174 aa13.69□□□□□ -0.22
CLN3-243ENST00000635973 K7EMT4 169 aa13.69□□□□□ -0.22
CLN3-243ENST00000635973 RLN2P04090 185 aa13.69□□□□□ -0.22
CLN3-243ENST00000635973 FRMD6-AS1P0C7T7 363 aa13.69□□□□□ -0.22
CLN3-243ENST00000635973 H2BFSP57053 126 aa13.69□□□□□ -0.22
CLN3-243ENST00000635973 YPEL3P61236 119 aaPredicted RBP13.69□□□□□ -0.22
CLN3-243ENST00000635973 RRAS2P62070 204 aaPredicted RBP13.69□□□□□ -0.22
CLN3-243ENST00000635973 IL15RAQ13261 267 aa13.69□□□□□ -0.22
CLN3-243ENST00000635973 OXA1LQ15070 435 aa13.69□□□□□ -0.22
CLN3-243ENST00000635973 CD300EQ496F6 205 aaPredicted RBP13.69□□□□□ -0.22
CLN3-243ENST00000635973 SBSPONQ8IVN8 264 aa13.69□□□□□ -0.22
CLN3-243ENST00000635973 OR2K2Q8NGT1 345 aa13.69□□□□□ -0.22
CLN3-243ENST00000635973 IGHV3-49A0A0A0MS15 119 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 TRAV14DV4A0A0A6YYC5 116 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 C3orf84H3BNL1 204 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 CCNKO75909 580 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 FABP1P07148 127 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 BMI1P35226 326 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 DEFB114Q30KQ6 69 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 ZNF414Q96IQ9 312 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 RCHY1Q96PM5 261 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 ZFAND3Q9H8U3 227 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 MLXQ9UH92 298 aa13.68□□□□□ -0.22
CLN3-243ENST00000635973 IGHV7-4-1A0A0J9YVY3 117 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 DEDDO75618 318 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 SCAF4O95104 1147 aaKnown RBP13.67□□□□□ -0.22
CLN3-243ENST00000635973 TOMM40O96008 361 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 PET100P0DJ07 73 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 RD3LP0DJH9 198 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 C8orf88P0DMB2 117 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 DLK1P80370 383 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 GUCA2BQ16661 112 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 STX12Q86Y82 276 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 PPP1R1CQ8WVI7 109 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 NARS2Q96I59 477 aaKnown RBP13.67□□□□□ -0.22
CLN3-243ENST00000635973 METTL26Q96S19 204 aa13.67□□□□□ -0.22
CLN3-243ENST00000635973 LYRM2Q9NU23 88 aaPredicted RBP13.67□□□□□ -0.22
CLN3-243ENST00000635973 FAM24AA6NFZ4 105 aa13.66□□□□□ -0.22
CLN3-243ENST00000635973 PMS2P5A8MQ11 134 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms