RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 FAM90A26D6RGX4 464 aa14.12□□□□□ -0.15
CDX1-202ENST00000616154 NDUFA4O00483 81 aa14.12□□□□□ -0.15
CDX1-202ENST00000616154 IAH1Q2TAA2 248 aaPredicted RBP14.12□□□□□ -0.15
CDX1-202ENST00000616154 RBPMS2Q6ZRY4 209 aaKnown RBP14.12□□□□□ -0.15
CDX1-202ENST00000616154 ASB13Q8WXK3 278 aa14.12□□□□□ -0.15
CDX1-202ENST00000616154 TXN2Q99757 166 aa14.12□□□□□ -0.15
CDX1-202ENST00000616154 CHRDL1Q9BU40 450 aa14.12□□□□□ -0.15
CDX1-202ENST00000616154 HSPB7Q9UBY9 170 aa14.12□□□□□ -0.15
CDX1-202ENST00000616154 OR2T8A6NH00 312 aa14.11□□□□□ -0.15
CDX1-202ENST00000616154 ST8SIA3O43173 380 aa14.11□□□□□ -0.15
CDX1-202ENST00000616154 SIX6O95475 246 aa14.11□□□□□ -0.15
CDX1-202ENST00000616154 CTSGP08311 255 aa14.11□□□□□ -0.15
CDX1-202ENST00000616154 BCAP31P51572 246 aa14.11□□□□□ -0.15
CDX1-202ENST00000616154 ERHP84090 104 aaKnown RBP14.11□□□□□ -0.15
CDX1-202ENST00000616154 ID3Q02535 119 aa14.11□□□□□ -0.15
CDX1-202ENST00000616154 NMES1Q9C002 83 aa14.11□□□□□ -0.15
CDX1-202ENST00000616154 DAZ1Q9NQZ3 744 aaKnown RBP14.11□□□□□ -0.15
CDX1-202ENST00000616154 C5orf51A6NDU8 294 aa14.1□□□□□ -0.15
CDX1-202ENST00000616154 K7EMT4 169 aa14.1□□□□□ -0.15
CDX1-202ENST00000616154 BSXQ3C1V8 233 aa14.1□□□□□ -0.15
CDX1-202ENST00000616154 IGHV3-35A0A0C4DH35 117 aa14.09□□□□□ -0.15
CDX1-202ENST00000616154 GIPP09681 153 aaPredicted RBP14.09□□□□□ -0.15
CDX1-202ENST00000616154 SPCS3P61009 180 aa14.09□□□□□ -0.15
CDX1-202ENST00000616154 CYCSP99999 105 aaKnown RBP14.09□□□□□ -0.15
CDX1-202ENST00000616154 TNFRSF9Q07011 255 aa14.09□□□□□ -0.15
CDX1-202ENST00000616154 WFDC3Q8IUB2 231 aa14.09□□□□□ -0.15
CDX1-202ENST00000616154 SPAG8Q99932 426 aaPredicted RBP14.09□□□□□ -0.15
CDX1-202ENST00000616154 TP53TG1Q9Y2A0 90 aa14.09□□□□□ -0.15
CDX1-202ENST00000616154 hCG_2014768A0A024R1R8 64 aa14.08□□□□□ -0.16
CDX1-202ENST00000616154 IGHV3-21A0A0B4J1V1 117 aa14.08□□□□□ -0.16
CDX1-202ENST00000616154 C15orf62A8K5M9 175 aa14.08□□□□□ -0.16
CDX1-202ENST00000616154 FAM25EA8MYX2 175 aa14.08□□□□□ -0.16
CDX1-202ENST00000616154 MT-CO2P00403 227 aa14.08□□□□□ -0.16
CDX1-202ENST00000616154 MFAP4P55083 255 aa14.08□□□□□ -0.16
CDX1-202ENST00000616154 OR1S1Q8NH92 325 aa14.08□□□□□ -0.16
CDX1-202ENST00000616154 LINC00476Q8WZB0 136 aa14.08□□□□□ -0.16
CDX1-202ENST00000616154 TSPAN4O14817 238 aa14.07□□□□□ -0.16
CDX1-202ENST00000616154 MBPP02686 304 aaPredicted RBP14.07□□□□□ -0.16
CDX1-202ENST00000616154 RNASE2P10153 161 aaKnown RBP14.07□□□□□ -0.16
CDX1-202ENST00000616154 NKX2-1P43699 371 aaPredicted RBP14.07□□□□□ -0.16
CDX1-202ENST00000616154 APOC4P55056 127 aa14.07□□□□□ -0.16
CDX1-202ENST00000616154 RELQ04864 619 aaPredicted RBP14.07□□□□□ -0.16
CDX1-202ENST00000616154 Q56UQ5 140 aa14.07□□□□□ -0.16
CDX1-202ENST00000616154 Q6ZWC4 215 aa14.07□□□□□ -0.16
CDX1-202ENST00000616154 MISP3Q96FF7 219 aa14.07□□□□□ -0.16
CDX1-202ENST00000616154 CORTO00230 105 aa14.06□□□□□ -0.16
CDX1-202ENST00000616154 NUPL2O15504 423 aaKnown RBP14.06□□□□□ -0.16
CDX1-202ENST00000616154 IFNA17P01571 189 aa14.06□□□□□ -0.16
CDX1-202ENST00000616154 RAP2BP61225 183 aa14.06□□□□□ -0.16
CDX1-202ENST00000616154 SPINK9Q5DT21 86 aa14.06□□□□□ -0.16
CDX1-202ENST00000616154 PDCD10Q9BUL8 212 aa14.06□□□□□ -0.16
CDX1-202ENST00000616154 C11orf1Q9H5F2 150 aa14.06□□□□□ -0.16
CDX1-202ENST00000616154 GSKIPQ9P0R6 139 aa14.06□□□□□ -0.16
CDX1-202ENST00000616154 A0A0J9YWU9 116 aa14.05□□□□□ -0.16
CDX1-202ENST00000616154 CXorf65A6NEN9 183 aa14.05□□□□□ -0.16
CDX1-202ENST00000616154 UBE2CO00762 179 aa14.05□□□□□ -0.16
CDX1-202ENST00000616154 BMI1P35226 326 aa14.05□□□□□ -0.16
CDX1-202ENST00000616154 SNCAP37840 140 aa14.05□□□□□ -0.16
CDX1-202ENST00000616154 LAMTOR1Q6IAA8 161 aa14.05□□□□□ -0.16
CDX1-202ENST00000616154 UBAC2Q8NBM4 344 aa14.05□□□□□ -0.16
CDX1-202ENST00000616154 ST6GAL2Q96JF0 529 aa14.05□□□□□ -0.16
CDX1-202ENST00000616154 UBQLN2Q9UHD9 624 aa14.05□□□□□ -0.16
CDX1-202ENST00000616154 RCL1Q9Y2P8 373 aaKnown RBP14.05□□□□□ -0.16
CDX1-202ENST00000616154 NUPR2A6NF83 97 aa14.04□□□□□ -0.16
CDX1-202ENST00000616154 G3V3Q6 166 aa14.04□□□□□ -0.16
CDX1-202ENST00000616154 K7EPK0 472 aa14.04□□□□□ -0.16
CDX1-202ENST00000616154 SPRY2O43597 315 aa14.04□□□□□ -0.16
CDX1-202ENST00000616154 SYNGR2O43760 224 aa14.04□□□□□ -0.16
CDX1-202ENST00000616154 MED6O75586 246 aa14.04□□□□□ -0.16
CDX1-202ENST00000616154 HOXA1P49639 335 aaPredicted RBP14.04□□□□□ -0.16
CDX1-202ENST00000616154 SUB1P53999 127 aaKnown RBP eCLIP14.04□□□□□ -0.16
CDX1-202ENST00000616154 RAB32Q13637 225 aa14.04□□□□□ -0.16
CDX1-202ENST00000616154 ODF3L2Q3SX64 289 aa14.04□□□□□ -0.16
CDX1-202ENST00000616154 PPP1R1CQ8WVI7 109 aa14.04□□□□□ -0.16
CDX1-202ENST00000616154 RBKSQ9H477 322 aa14.04□□□□□ -0.16
CDX1-202ENST00000616154 KIR2DL5BA0A0G2JN68 375 aa14.03□□□□□ -0.16
CDX1-202ENST00000616154 KIR2DL5BA0A0G2JPC4 375 aa14.03□□□□□ -0.16
CDX1-202ENST00000616154 NPBWR1P48145 328 aa14.03□□□□□ -0.16
CDX1-202ENST00000616154 POLR2GP62487 172 aaKnown RBP eCLIP14.03□□□□□ -0.16
CDX1-202ENST00000616154 EWSR1Q01844 656 aaKnown RBP eCLIP14.03□□□□□ -0.16
CDX1-202ENST00000616154 PMS2P11Q13670 270 aa14.03□□□□□ -0.16
CDX1-202ENST00000616154 DEFB135Q30KP9 77 aa14.03□□□□□ -0.16
CDX1-202ENST00000616154 KIR2DL5AQ8N109 375 aa14.03□□□□□ -0.16
CDX1-202ENST00000616154 KIR2DL5BQ8NHK3 375 aa14.03□□□□□ -0.16
CDX1-202ENST00000616154 FRAS1Q86XX4 4008 aa14.02□□□□□ -0.16
CDX1-202ENST00000616154 OR4C46A6NHA9 309 aa14.02□□□□□ -0.17
CDX1-202ENST00000616154 H0YIZ8 118 aa14.02□□□□□ -0.17
CDX1-202ENST00000616154 MPC2O95563 127 aa14.02□□□□□ -0.17
CDX1-202ENST00000616154 TMEM50AO95807 157 aa14.02□□□□□ -0.17
CDX1-202ENST00000616154 ATF4P18848 351 aaPredicted RBP14.02□□□□□ -0.17
CDX1-202ENST00000616154 PAX9P55771 341 aa14.02□□□□□ -0.17
CDX1-202ENST00000616154 TAS2R30P59541 319 aa14.02□□□□□ -0.17
CDX1-202ENST00000616154 DTD1Q8TEA8 209 aa14.02□□□□□ -0.17
CDX1-202ENST00000616154 PINX1Q96BK5 328 aaKnown RBP14.02□□□□□ -0.17
CDX1-202ENST00000616154 RAB40CQ96S21 281 aa14.02□□□□□ -0.17
CDX1-202ENST00000616154 FNDC4Q9H6D8 234 aaPredicted RBP14.02□□□□□ -0.17
CDX1-202ENST00000616154 SMPXQ9UHP9 88 aa14.02□□□□□ -0.17
CDX1-202ENST00000616154 KMT2AQ03164 3969 aa14.02□□□□□ -0.17
CDX1-202ENST00000616154 TRAV14DV4A0A0A6YYC5 116 aa14.01□□□□□ -0.17
CDX1-202ENST00000616154 GNG7O60262 68 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms