RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 SNRNP40Q96DI7 357 aaKnown RBP12.04□□□□□ -0.48
SMARCA4-219ENST00000592604 MRPS16Q9Y3D3 137 aaKnown RBP12.04□□□□□ -0.48
SMARCA4-219ENST00000592604 PEX7O00628 323 aa12.03□□□□□ -0.48
SMARCA4-219ENST00000592604 NKX2-8O15522 239 aa12.03□□□□□ -0.48
SMARCA4-219ENST00000592604 SEM1Q6ZVN7 128 aa12.03□□□□□ -0.48
SMARCA4-219ENST00000592604 OR1L4Q8NGR5 311 aa12.03□□□□□ -0.48
SMARCA4-219ENST00000592604 CCL13Q99616 98 aa12.03□□□□□ -0.48
SMARCA4-219ENST00000592604 PAXXQ9BUH6 204 aa12.03□□□□□ -0.48
SMARCA4-219ENST00000592604 NBEAP1P0C6P0 100 aa12.03□□□□□ -0.48
SMARCA4-219ENST00000592604 PATE2Q6UY27 113 aa12.03□□□□□ -0.48
SMARCA4-219ENST00000592604 PPIAL4AQ9Y536 164 aa12.03□□□□□ -0.48
SMARCA4-219ENST00000592604 LOC102724200A0A096LPH7 203 aaPredicted RBP12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 MBD3L4A6NDZ8 208 aaPredicted RBP12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 MBD3L3A6NE82 208 aaPredicted RBP12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 MBD3L5A6NJ08 208 aaPredicted RBP12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 FSTL3O95633 263 aa12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 PYYP10082 97 aa12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 TSPOP30536 169 aa12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 C10orf113Q5VZT2 155 aa12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 OR8B3Q8NGG8 313 aa12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 MBD3L2Q8NHZ7 208 aaPredicted RBP12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 LOXL4Q96JB6 756 aa12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 OR8B2Q96RD0 313 aa12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 C7orf69Q9H7B7 122 aa12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 SAP30LQ9HAJ7 183 aa12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 ZNRD1Q9P1U0 126 aa12.02□□□□□ -0.48
SMARCA4-219ENST00000592604 COX7A2P2O60397 106 aa12.02□□□□□ -0.49
SMARCA4-219ENST00000592604 HSBP1O75506 76 aa12.02□□□□□ -0.49
SMARCA4-219ENST00000592604 MYCNOSP40205 109 aa12.02□□□□□ -0.49
SMARCA4-219ENST00000592604 RPL8P62917 257 aaKnown RBP12.02□□□□□ -0.49
SMARCA4-219ENST00000592604 TMEM177Q53S58 311 aa12.02□□□□□ -0.49
SMARCA4-219ENST00000592604 FAM216BQ8N7L0 139 aa12.02□□□□□ -0.49
SMARCA4-219ENST00000592604 DEFB108BQ8NET1 73 aa12.02□□□□□ -0.49
SMARCA4-219ENST00000592604 ORAOV1Q8WV07 137 aa12.02□□□□□ -0.49
SMARCA4-219ENST00000592604 DSPP15924 2871 aaKnown RBP12.02□□□□□ -0.49
SMARCA4-219ENST00000592604 FAM181BA6NEQ2 426 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 SP9P0CG40 484 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 APOBEC3AP31941 199 aaPredicted RBP12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 SSBP2P81877 361 aaPredicted RBP12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 ATP5L2Q7Z4Y8 100 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 RND1Q92730 232 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 FXYD5Q96DB9 178 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 HARBI1Q96MB7 349 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 TNFRSF19Q9NS68 423 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 LOC105371242A0A075B767 164 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 TRAV9-2A0A087WT02 112 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 hADV38S2A0JD32 116 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 E7EUB6 86 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 APOA2P02652 100 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 TNFAIP6P98066 277 aaPredicted RBP12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 ASPHD1Q5U4P2 390 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 LCN12Q6JVE5 192 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 EBLN2Q6P2I7 272 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 OR5AN1Q8NGI8 311 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 MRPL20Q9BYC9 149 aaKnown RBP12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 FNDC4Q9H6D8 234 aaPredicted RBP12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 LINC00312Q9Y6C7 94 aa12.01□□□□□ -0.49
SMARCA4-219ENST00000592604 IGKV1D-37A0A075B6S9 117 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 TRAV34A0A0B4J273 112 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 TCRBV4S1A1TA0A5B7 111 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 H0YJW9 148 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 IGHV1-46P01743 117 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 HIST1H1EP10412 219 aaKnown RBP12□□□□□ -0.49
SMARCA4-219ENST00000592604 THAP8Q8NA92 274 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 TMEM167AQ8TBQ9 72 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 IGHV2-26A0A0B4J1V2 119 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 A0A1B0GXF2 115 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 C2orf70A6NJV1 201 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 SCGB2A2Q13296 93 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 TEX36Q5VZQ5 186 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 ZNF474Q6S9Z5 364 aaPredicted RBP12□□□□□ -0.49
SMARCA4-219ENST00000592604 SMIM12Q96EX1 92 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 GUCD1Q96NT3 240 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 DYSFO75923 2080 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 HIGD1CA8MV81 97 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 M0R2Z0 102 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 ATOH7Q8N100 152 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 OR4A5Q8NH83 315 aa12□□□□□ -0.49
SMARCA4-219ENST00000592604 NCOR1O75376 2440 aa11.99□□□□□ -0.49
SMARCA4-219ENST00000592604 ICE1Q9Y2F5 2266 aa11.99□□□□□ -0.49
SMARCA4-219ENST00000592604 CGB1A6NKQ9 187 aa11.99□□□□□ -0.49
SMARCA4-219ENST00000592604 VWC2LB2RUY7 222 aa11.99□□□□□ -0.49
SMARCA4-219ENST00000592604 WT1-ASQ06250 92 aa11.99□□□□□ -0.49
SMARCA4-219ENST00000592604 NPIPB3Q92617 1050 aa11.99□□□□□ -0.49
SMARCA4-219ENST00000592604 KLF12Q9Y4X4 402 aa11.99□□□□□ -0.49
SMARCA4-219ENST00000592604 UBE2G1P62253 170 aa11.99□□□□□ -0.49
SMARCA4-219ENST00000592604 ZNF841Q6ZN19 808 aa11.99□□□□□ -0.49
SMARCA4-219ENST00000592604 MUC3AQ02505 3323 aa11.98□□□□□ -0.49
SMARCA4-219ENST00000592604 SRSF6Q13247 344 aaKnown RBP11.98□□□□□ -0.49
SMARCA4-219ENST00000592604 FLYWCH2Q96CP2 140 aaKnown RBP11.98□□□□□ -0.49
SMARCA4-219ENST00000592604 SUB1P53999 127 aaKnown RBP eCLIP11.98□□□□□ -0.492e-7■■■□□ 15.7
SMARCA4-219ENST00000592604 STXBP6Q8NFX7 210 aa11.98□□□□□ -0.49
SMARCA4-219ENST00000592604 EPDR1Q9UM22 224 aa11.98□□□□□ -0.49
SMARCA4-219ENST00000592604 COL6A3P12111 3177 aa11.97□□□□□ -0.49
SMARCA4-219ENST00000592604 MC5RP33032 325 aa11.97□□□□□ -0.49
SMARCA4-219ENST00000592604 GPR6P46095 362 aaPredicted RBP11.97□□□□□ -0.49
SMARCA4-219ENST00000592604 MEF2CQ06413 473 aaPredicted RBP11.97□□□□□ -0.49
SMARCA4-219ENST00000592604 FAM162BQ5T6X4 162 aa11.97□□□□□ -0.49
SMARCA4-219ENST00000592604 VSTM2AQ8TAG5 236 aa11.97□□□□□ -0.49
SMARCA4-219ENST00000592604 SSBP4Q9BWG4 385 aaPredicted RBP11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms