RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 IGLC1P0CG04 106 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 OR10J1P30954 320 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 ELLP55199 621 aaPredicted RBP11.94□□□□□ -0.5
CHD3-215ENST00000572750 ATP5IP56385 69 aaPredicted RBP11.94□□□□□ -0.5
CHD3-215ENST00000572750 RAB11AP62491 216 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 DEFB114Q30KQ6 69 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 ETFRF1Q6IPR1 90 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 LCN12Q6JVE5 192 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 TOMM20LQ6UXN7 152 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 ZNF600Q6ZNG1 722 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 TMEM116Q8NCL8 245 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 NPIPB3Q92617 1050 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 ZFAND3Q9H8U3 227 aa11.94□□□□□ -0.5
CHD3-215ENST00000572750 PUS1Q9Y606 427 aaKnown RBP eCLIP11.94□□□□□ -0.5
CHD3-215ENST00000572750 TENM2Q9NT68 2774 aa11.93□□□□□ -0.5
CHD3-215ENST00000572750 IGHV3-49A0A0A0MS15 119 aa11.93□□□□□ -0.5
CHD3-215ENST00000572750 SNRPGP15A8MWD9 76 aa11.93□□□□□ -0.5
CHD3-215ENST00000572750 GOSR2O14653 212 aa11.93□□□□□ -0.5
CHD3-215ENST00000572750 SCGB2A1O75556 95 aa11.93□□□□□ -0.5
CHD3-215ENST00000572750 RPP30P78346 268 aaKnown RBP11.93□□□□□ -0.5
CHD3-215ENST00000572750 GSG1LQ6UXU4 331 aa11.93□□□□□ -0.5
CHD3-215ENST00000572750 MARC2Q969Z3 335 aa11.93□□□□□ -0.5
CHD3-215ENST00000572750 WDR89Q96FK6 387 aaPredicted RBP11.93□□□□□ -0.5
CHD3-215ENST00000572750 SLC35E1Q96K37 410 aa11.93□□□□□ -0.5
CHD3-215ENST00000572750 PSENENQ9NZ42 101 aa11.93□□□□□ -0.5
CHD3-215ENST00000572750 STRAPQ9Y3F4 350 aaKnown RBP11.93□□□□□ -0.5
CHD3-215ENST00000572750 LSM5Q9Y4Y9 91 aaKnown RBP11.93□□□□□ -0.5
CHD3-215ENST00000572750 PRSS46E5RG02 174 aa11.92□□□□□ -0.5
CHD3-215ENST00000572750 SIX6O95475 246 aa11.92□□□□□ -0.5
CHD3-215ENST00000572750 C8orf88P0DMB2 117 aa11.92□□□□□ -0.5
CHD3-215ENST00000572750 PAX9P55771 341 aa11.92□□□□□ -0.5
CHD3-215ENST00000572750 S100A10P60903 97 aa11.92□□□□□ -0.5
CHD3-215ENST00000572750 TMEM61Q8N0U2 210 aa11.92□□□□□ -0.5
CHD3-215ENST00000572750 OR1S2Q8NGQ3 325 aa11.92□□□□□ -0.5
CHD3-215ENST00000572750 OR2K2Q8NGT1 345 aa11.92□□□□□ -0.5
CHD3-215ENST00000572750 C2orf50Q96LR7 162 aa11.92□□□□□ -0.5
CHD3-215ENST00000572750 TECRQ9NZ01 308 aaKnown RBP11.92□□□□□ -0.5
CHD3-215ENST00000572750 MRPL27Q9P0M9 148 aaKnown RBP11.92□□□□□ -0.5
CHD3-215ENST00000572750 IGHV3OR16-13A0A075B7E8 117 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 TRAV30A0A087WSZ9 112 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 IGHV3-74A0A0B4J1X5 117 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 K7EMT4 169 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 K7EPK0 472 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 CCNKO75909 580 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 SCAF4O95104 1147 aaKnown RBP11.91□□□□□ -0.5
CHD3-215ENST00000572750 GPX4P36969 197 aaPredicted RBP11.91□□□□□ -0.5
CHD3-215ENST00000572750 GAMTQ14353 236 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 DEFB121Q5J5C9 76 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 ACOT7LQ6ZUV0 252 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 SMIM8Q96KF7 97 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 RAB40CQ96S21 281 aa11.91□□□□□ -0.5
CHD3-215ENST00000572750 HYDINQ4G0P3 5121 aa11.9□□□□□ -0.5
CHD3-215ENST00000572750 IGHV7-4-1A0A0J9YVY3 117 aa11.9□□□□□ -0.5
CHD3-215ENST00000572750 C7orf66A4D0T2 115 aa11.9□□□□□ -0.5
CHD3-215ENST00000572750 SSNA1O43805 119 aa11.9□□□□□ -0.5
CHD3-215ENST00000572750 METTL15P1P0C7V9 234 aa11.9□□□□□ -0.5
CHD3-215ENST00000572750 GUCA2BQ16661 112 aa11.9□□□□□ -0.5
CHD3-215ENST00000572750 OR8G2PQ6IF36 304 aa11.9□□□□□ -0.5
CHD3-215ENST00000572750 GINS3Q9BRX5 216 aa11.9□□□□□ -0.5
CHD3-215ENST00000572750 LSM4Q9Y4Z0 139 aaKnown RBP11.9□□□□□ -0.5
CHD3-215ENST00000572750 IGKV1D-37A0A075B6S9 117 aa11.89□□□□□ -0.51
CHD3-215ENST00000572750 TRAV14DV4A0A0A6YYC5 116 aa11.89□□□□□ -0.51
CHD3-215ENST00000572750 IGHV3-66A0A0C4DH42 116 aa11.89□□□□□ -0.51
CHD3-215ENST00000572750 ZFP92A6NM28 416 aa11.89□□□□□ -0.51
CHD3-215ENST00000572750 TSC22D2O75157 780 aa11.89□□□□□ -0.51
CHD3-215ENST00000572750 APOHP02749 345 aaPredicted RBP11.89□□□□□ -0.51
CHD3-215ENST00000572750 RAB32Q13637 225 aa11.89□□□□□ -0.51
CHD3-215ENST00000572750 TMEM14EPQ6UXP3 125 aa11.89□□□□□ -0.51
CHD3-215ENST00000572750 SMPXQ9UHP9 88 aa11.89□□□□□ -0.51
CHD3-215ENST00000572750 ALG5Q9Y673 324 aa11.89□□□□□ -0.51
CHD3-215ENST00000572750 IGKV1OR2-108A0A075B7D4 117 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 ZNF785A8K8V0 405 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 PMS2P5A8MQ11 134 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 L7N2F9 121 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 CHEK1O14757 476 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 IL4P05112 153 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 TAS2R30P59541 319 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 YPEL3P61236 119 aaPredicted RBP11.88□□□□□ -0.51
CHD3-215ENST00000572750 VAMP2P63027 116 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 ZNF90Q03938 601 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 AKR1C1Q04828 323 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 IL15RAQ13261 267 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 DCTN2Q13561 401 aaKnown RBP11.88□□□□□ -0.51
CHD3-215ENST00000572750 GTSCR1Q86UQ5 136 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 ST8SIA2Q92186 375 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 RNF2Q99496 336 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 RHPN1-AS1Q9BWJ2 59 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 C11orf1Q9H5F2 150 aa11.88□□□□□ -0.51
CHD3-215ENST00000572750 SMCO3A2RU48 225 aa11.87□□□□□ -0.51
CHD3-215ENST00000572750 TOMM40O96008 361 aa11.87□□□□□ -0.51
CHD3-215ENST00000572750 PSG1P11464 419 aa11.87□□□□□ -0.51
CHD3-215ENST00000572750 CAV2P51636 162 aa11.87□□□□□ -0.51
CHD3-215ENST00000572750 H2BFSP57053 126 aa11.87□□□□□ -0.51
CHD3-215ENST00000572750 CD81P60033 236 aa11.87□□□□□ -0.51
CHD3-215ENST00000572750 RRAS2P62070 204 aaPredicted RBP11.87□□□□□ -0.51
CHD3-215ENST00000572750 USF2Q15853 346 aaPredicted RBP11.87□□□□□ -0.51
CHD3-215ENST00000572750 LRRC37A5PQ49AS3 106 aa11.87□□□□□ -0.51
CHD3-215ENST00000572750 RBPMS2Q6ZRY4 209 aaKnown RBP11.87□□□□□ -0.51
CHD3-215ENST00000572750 Q8N1Y9 231 aa11.87□□□□□ -0.51
CHD3-215ENST00000572750 Q8WTZ3 238 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms