RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 IGHV4-4A0A075B6R2 117 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 IGKV1-12A0A0C4DH73 117 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 RBMY1BA6NDE4 496 aaKnown RBP4.64□□□□□ -1.67
VPS53-212ENST00000572259 RBMY1EA6NEQ0 496 aaKnown RBP4.64□□□□□ -1.67
VPS53-212ENST00000572259 C17orf98A8MV24 154 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 OR11H12B2RN74 326 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 C15orf65H3BRN8 121 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 SLC17A2O00624 439 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 OR7C1O76099 320 aaPredicted RBP4.64□□□□□ -1.67
VPS53-212ENST00000572259 CDRT1O95170 752 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 IGKV1D-12P01611 117 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 RBMY1DP0C7P1 496 aaKnown RBP4.64□□□□□ -1.67
VPS53-212ENST00000572259 RBMY1A1P0DJD3 496 aaKnown RBP4.64□□□□□ -1.67
VPS53-212ENST00000572259 GZMHP20718 246 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 F2RP25116 425 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 PSMB9P28065 219 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 RPL5P46777 297 aaKnown RBP4.64□□□□□ -1.67
VPS53-212ENST00000572259 GABARAPL2P60520 117 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 RPS11P62280 158 aaKnown RBP eCLIP4.64□□□□□ -1.67
VPS53-212ENST00000572259 SRPXP78539 464 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 LRRC75BQ2VPJ9 315 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 CNPY1Q3B7I2 92 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 KIAA1644Q3SXP7 199 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 CDNFQ49AH0 187 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 HSD17B12Q53GQ0 312 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 TMEM97Q5BJF2 176 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 NHLRC3Q5JS37 347 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 RUSC1-AS1Q66K80 236 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 UNQ9370/PRO34162Q6UXP9 181 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 NFE4Q86UQ8 179 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.64□□□□□ -1.67
VPS53-212ENST00000572259 OR11H1Q8NG94 326 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 OR4S1Q8NGB4 309 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 OR11H2Q8NH07 326 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 COQ8AQ8NI60 647 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 ASB13Q8WXK3 278 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 RGP1Q92546 391 aaPredicted RBP4.64□□□□□ -1.67
VPS53-212ENST00000572259 MALSU1Q96EH3 234 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 BTF3L4Q96K17 158 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 DERL3Q96Q80 235 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 MGLLQ99685 303 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 SULT4A1Q9BR01 284 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 TMED9Q9BVK6 235 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 CST11Q9H112 138 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 VSIRQ9H7M9 311 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 ZNF580Q9UK33 172 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 SIGLEC9Q9Y336 463 aa4.64□□□□□ -1.67
VPS53-212ENST00000572259 MEIKINA0A087WXM9 373 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 TGIF2-C20orf24A0A0A6YYL0 155 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 TRAV39A0A0B4J263 110 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 ODAMA1E959 279 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 MCRIP1C9JLW8 97 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 K7EQG2 157 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 M0QZK8 103 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 TCAPO15273 167 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 CA11O75493 328 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 IGHV1-8P0DP01 117 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 SCGB1A1P11684 91 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 CCL3L1P16619 93 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 COX7A1P24310 79 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 MYL9P24844 172 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 OR3A4PP47883 348 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 RND2P52198 227 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 APOC4P55056 127 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 RBM11P57052 281 aaKnown RBP4.63□□□□□ -1.67
VPS53-212ENST00000572259 RPL32P62910 135 aaKnown RBP4.63□□□□□ -1.67
VPS53-212ENST00000572259 KLRD1Q13241 179 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 PPP1R1AQ13522 171 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 NDUFA5Q16718 116 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 ATAD3CQ5T2N8 411 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 MINOS1Q5TGZ0 78 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 SLC35E4Q6ICL7 350 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 Q6P435 159 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 GLIPR1L1Q6UWM5 242 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 HEPN1Q6WQI6 88 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 Q6ZVH6 145 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 OR10K1Q8NGX5 313 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 CHCHD10Q8WYQ3 142 aaPredicted RBP4.63□□□□□ -1.67
VPS53-212ENST00000572259 OR5M11Q96RB7 305 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 CLEC7AQ9BXN2 247 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 C20orf85Q9H1P6 137 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 TNFRSF19Q9NS68 423 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 OR1A1Q9P1Q5 309 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 PRO0628Q9UI54 55 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 LSM2Q9Y333 95 aaKnown RBP4.63□□□□□ -1.67
VPS53-212ENST00000572259 MINOS1-NBL1R4GNA1 71 aa4.63□□□□□ -1.67
VPS53-212ENST00000572259 TEX48A0A1B0GUV7 120 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 MDFIC2A0A1B0GVS7 189 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 TMEM30CPA0ZSE6 113 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 FOXI3A8MTJ6 420 aaPredicted RBP4.62□□□□□ -1.67
VPS53-212ENST00000572259 LEUTXA8MZ59 168 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 C12orf77C9JDV5 145 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 LINC01619G3V211 115 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 TSTD3H0UI37 97 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 H7C1H1 209 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 MFNGO00587 321 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 PDCD5O14737 125 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 GEMIN2O14893 280 aaKnown RBP4.62□□□□□ -1.67
VPS53-212ENST00000572259 UCHL1P09936 223 aa4.62□□□□□ -1.67
VPS53-212ENST00000572259 AKR1C4P17516 323 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms