RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 KRTAP10-1P60331 282 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 ERVK-16P61578 105 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 HAMPP81172 84 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 MSMO1Q15800 293 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 AADACL3Q5VUY0 350 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 HACD4Q5VWC8 232 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 ZNF503Q96F45 646 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 METTL26Q96S19 204 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 SLIRPQ9GZT3 109 aaKnown RBP8.18□□□□□ -1.1
CLK3-222ENST00000568232 ATG5Q9H1Y0 275 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 COMMD9Q9P000 198 aa8.18□□□□□ -1.1
CLK3-222ENST00000568232 LOC100506127A0A0U1RQW1 187 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 METTL21EPA6NDL7 271 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 TMEM235A6NFC5 223 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 FAM90A26D6RGX4 464 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 ARL6IP5O75915 188 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 SNAPC5O75971 98 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 PPYP01298 95 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 HLA-DRB4P13762 266 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 RAB6AP20340 208 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 NPBWR1P48145 328 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 FXYD4P59646 89 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 NCS1P62166 190 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 RGS21Q2M5E4 152 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 SPANXN2Q5MJ10 180 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 KRTAP19-1Q8IUB9 90 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 C1orf158Q8N1D5 194 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 ZBTB34Q8NCN2 500 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 UHRF2Q96PU4 802 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 HLA-DRB4X5D2U9 266 aa8.17□□□□□ -1.1
CLK3-222ENST00000568232 TRDV1A0A1B0GX56 115 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 F5H768 121 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 TMEM127O75204 238 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 HBE1P02100 147 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 PRM2P04554 102 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 NAT1P18440 290 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 ETV6P41212 452 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 LPAR6P43657 344 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 LSM3P62310 102 aaKnown RBP8.16□□□□□ -1.1
CLK3-222ENST00000568232 Q6ZSN1 163 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 TPRA1Q86W33 373 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 ZNF709Q8N972 641 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 RNF141Q8WVD5 230 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 FCAMRQ8WWV6 532 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 SLC35B3Q9H1N7 401 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 Q9H3A6 140 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 MRPL36Q9P0J6 103 aaKnown RBP8.16□□□□□ -1.1
CLK3-222ENST00000568232 PRNDQ9UKY0 176 aa8.16□□□□□ -1.1
CLK3-222ENST00000568232 IFITM5A6NNB3 132 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 FCER2P06734 321 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 DEFB130BP0DP73 79 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 DEFB130AP0DP74 79 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 GNRHRP30968 328 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 TGFBR1P36897 503 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 ARPC4P59998 168 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 SNRPD3P62318 126 aaKnown RBP8.15□□□□□ -1.1
CLK3-222ENST00000568232 CLINT1Q14677 625 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 USF2Q15853 346 aaPredicted RBP8.15□□□□□ -1.1
CLK3-222ENST00000568232 RRN3P1Q2M238 152 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 TTC32Q5I0X7 151 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 SERTAD4-AS1Q5TG53 156 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 C16orf54Q6UWD8 224 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 TMEM17Q86X19 198 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 ZNF114Q8NC26 417 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 GLMPQ8WWB7 406 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 TMEM230Q96A57 120 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 C7orf50Q9BRJ6 194 aaKnown RBP8.15□□□□□ -1.1
CLK3-222ENST00000568232 ZNF586Q9NXT0 402 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 U3KQE9 123 aa8.15□□□□□ -1.1
CLK3-222ENST00000568232 PFDN1O60925 122 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 RLN1P04808 185 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 F2RP25116 425 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 RANBP1P43487 201 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 EIF2B2P49770 351 aaKnown RBP8.14□□□□□ -1.11
CLK3-222ENST00000568232 DEFA1P59665 94 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 DEFA3P59666 94 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 GNG2P59768 71 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 ICAM4Q14773 271 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 ARL6IP1Q15041 203 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 FCN2Q15485 313 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 MLANAQ16655 118 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 SPINK9Q5DT21 86 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 MZT2AQ6P582 158 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 Q6ZNX1 250 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 Q6ZRN7 208 aaPredicted RBP8.14□□□□□ -1.11
CLK3-222ENST00000568232 NARS2Q96I59 477 aaKnown RBP8.14□□□□□ -1.11
CLK3-222ENST00000568232 CCDC32Q9BV29 185 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 FKBP11Q9NYL4 201 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 GOLT1BQ9Y3E0 138 aa8.14□□□□□ -1.11
CLK3-222ENST00000568232 SMIM30A4D0T7 59 aa8.13□□□□□ -1.11
CLK3-222ENST00000568232 KRTAP29-1A8MX34 341 aaPredicted RBP8.13□□□□□ -1.11
CLK3-222ENST00000568232 PGLYRP1O75594 196 aaPredicted RBP8.13□□□□□ -1.11
CLK3-222ENST00000568232 LINC00315P59091 139 aa8.13□□□□□ -1.11
CLK3-222ENST00000568232 TRIM16LQ309B1 348 aa8.13□□□□□ -1.11
CLK3-222ENST00000568232 TIGITQ495A1 244 aa8.13□□□□□ -1.11
CLK3-222ENST00000568232 C22orf42Q6IC83 251 aa8.13□□□□□ -1.11
CLK3-222ENST00000568232 SYT8Q8NBV8 401 aa8.13□□□□□ -1.11
CLK3-222ENST00000568232 BEST4Q8NFU0 473 aa8.13□□□□□ -1.11
CLK3-222ENST00000568232 OR4B1Q8NGF8 309 aa8.13□□□□□ -1.11
CLK3-222ENST00000568232 LGALS14Q8TCE9 139 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms